Analysis of interatomic Contacts of Structural Units in PDB entry:
6IMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IMV entry

There are 2 chains in PDB entry 6IMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 24	ASN 517
B	GLU 24	ASN 517

There are 50 helices in PDB entry 6IMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed 310
Helix 2	AA2	A	34	41	Right-handed alpha
Helix 3	AA3	A	41	54	Right-handed alpha
Helix 4	AA4	A	55	57	Right-handed 310
Helix 5	AA5	A	91	107	Right-handed alpha
Helix 6	AA6	A	109	117	Right-handed alpha
Helix 7	AA7	A	120	122	Right-handed 310
Helix 8	AA8	A	123	146	Right-handed alpha
Helix 9	AA9	A	147	150	Right-handed 310
Helix 10	AB1	A	167	170	Right-handed 310
Helix 11	AB2	A	175	195	Right-handed alpha
Helix 12	AB3	A	197	222	Right-handed alpha
Helix 13	AB4	A	263	274	Right-handed alpha
Helix 14	AB5	A	277	289	Right-handed alpha
Helix 15	AB6	A	290	292	Right-handed 310
Helix 16	AB7	A	314	323	Right-handed 310
Helix 17	AB8	A	325	328	Right-handed 310
Helix 18	AB9	A	329	350	Right-handed alpha
Helix 19	AC1	A	379	383	Right-handed 310
Helix 20	AC2	A	394	397	Right-handed 310
Helix 21	AC3	A	398	405	Right-handed alpha
Helix 22	AC4	A	405	418	Right-handed alpha
Helix 23	AC5	A	445	456	Right-handed alpha
Helix 24	AC6	A	459	470	Right-handed alpha
Helix 25	AC7	A	472	488	Right-handed alpha
Helix 26	AC8	B	28	33	Right-handed 310
Helix 27	AC9	B	34	41	Right-handed alpha
Helix 28	AD1	B	41	54	Right-handed alpha
Helix 29	AD2	B	55	57	Right-handed 310
Helix 30	AD3	B	91	107	Right-handed alpha
Helix 31	AD4	B	109	117	Right-handed alpha
Helix 32	AD5	B	120	122	Right-handed 310
Helix 33	AD6	B	123	146	Right-handed alpha
Helix 34	AD7	B	147	150	Right-handed 310
Helix 35	AD8	B	167	170	Right-handed 310
Helix 36	AD9	B	175	195	Right-handed alpha
Helix 37	AE1	B	197	222	Right-handed alpha
Helix 38	AE2	B	263	274	Right-handed alpha
Helix 39	AE3	B	277	289	Right-handed alpha
Helix 40	AE4	B	290	292	Right-handed 310
Helix 41	AE5	B	314	323	Right-handed 310
Helix 42	AE6	B	325	328	Right-handed 310
Helix 43	AE7	B	329	350	Right-handed alpha
Helix 44	AE8	B	379	383	Right-handed 310
Helix 45	AE9	B	394	397	Right-handed 310
Helix 46	AF1	B	398	405	Right-handed alpha
Helix 47	AF2	B	405	418	Right-handed alpha
Helix 48	AF3	B	445	456	Right-handed alpha
Helix 49	AF4	B	459	470	Right-handed alpha
Helix 50	AF5	B	472	488	Right-handed alpha

There are 18 sheets in PDB entry 6IMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	69	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	73	76	anti-parallel
Strand 3	A	442	444	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	156	157	anti-parallel
Strand 3	A	164	165	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	249	251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	228	229	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	299	first strand
Strand 2	A	302	308	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	360	first strand
Strand 2	A	373	374	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	431	433	anti-parallel
Strand 3	A	439	440	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	427	428	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	69	70	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	73	76	anti-parallel
Strand 3	B	442	444	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	156	157	anti-parallel
Strand 3	B	164	165	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	249	251	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	228	229	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	299	first strand
Strand 2	B	302	308	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	373	374	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	431	433	anti-parallel
Strand 3	B	439	440	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	427	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IMV