Analysis of interatomic Contacts of Structural Units in PDB entry:
6IN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IN9 entry

There are 4 chains in PDB entry 6IN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23ALA 313
B
 ALA 22ALA 313
C
 ILE 148GLU 192
D
 GLN 146GLU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6IN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
94 96Right-handed 310
Helix 3
AA3
A
114 117Right-handed 310
Helix 4
AA4
A
188 193Right-handed 310
Helix 5
AA5
A
297 306Right-handed alpha
Helix 6
AA6
B
23 38Right-handed alpha
Helix 7
AA7
B
94 96Right-handed 310
Helix 8
AA8
B
114 117Right-handed 310
Helix 9
AA9
B
297 307Right-handed alpha
Helix 10
AB1
C
153 161Right-handed alpha
Helix 11
AB2
C
162 178Right-handed alpha
Helix 12
AB3
C
182 190Right-handed alpha
Helix 13
AB4
D
152 161Right-handed alpha
Helix 14
AB5
D
162 177Right-handed alpha
Helix 15
AB6
D
182 190Right-handed alpha
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There are 6 sheets in PDB entry 6IN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 129first strand
Strand 2
A
132 141anti-parallel
Strand 3
A
148 154anti-parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
172 183anti-parallel
Strand 6
A
40 48anti-parallel
Strand 7
A
51 61anti-parallel
Strand 8
A
67 73anti-parallel
Strand 9
A
80 84anti-parallel
Strand 10
A
87 92anti-parallel
Strand 11
A
198 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
308 310anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 232first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
288 294anti-parallel
Strand 5
A
274 281anti-parallel
Strand 6
A
267 271anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 129first strand
Strand 2
B
132 141anti-parallel
Strand 3
B
148 154anti-parallel
Strand 4
B
160 166anti-parallel
Strand 5
B
172 182anti-parallel
Strand 6
B
40 48anti-parallel
Strand 7
B
51 61anti-parallel
Strand 8
B
67 73anti-parallel
Strand 9
B
80 84anti-parallel
Strand 10
B
87 92anti-parallel
Strand 11
B
198 200anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
308 310anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 232first strand
Strand 2
B
239 246anti-parallel
Strand 3
B
251 258anti-parallel
Strand 4
B
288 294anti-parallel
Strand 5
B
274 281anti-parallel
Strand 6
B
267 271anti-parallel
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