Analysis of interatomic Contacts of Structural Units in PDB entry:
6INC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6INC entry

There is 1 chain in PDB entry 6INC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27ASN 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6INC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 40Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
64 67Right-handed 310
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
160 167Right-handed alpha
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
237 243Right-handed alpha
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There are 3 sheets in PDB entry 6INC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
76 80anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
58 62anti-parallel
Strand 5
A
97 101anti-parallel
Strand 6
A
28 32anti-parallel
Strand 7
A
229 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
94 95anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
115 116first strand
Strand 3
A
134 148first strand
Strand 4
A
171 185anti-parallel
Strand 5
A
196 203anti-parallel
Strand 6
A
209 227anti-parallel
Strand 7
A
115 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il