Analysis of interatomic Contacts of Structural Units in PDB entry:
6INE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6INE entry

There are 2 chains in PDB entry 6INE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2025ILE 2279
B
 VAL 156ARG 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6INE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2033 2040Right-handed alpha
Helix 2
AA2
A
2048 2061Right-handed alpha
Helix 3
AA3
A
2108 2113Right-handed alpha
Helix 4
AA4
A
2124 2128Right-handed 310
Helix 5
AA5
A
2176 2186Right-handed alpha
Helix 6
AA6
A
2211 2216Right-handed 310
Helix 7
AA7
B
161 163Right-handed 310
Helix 8
AA8
B
164 177Right-handed alpha
Helix 9
AA9
B
189 203Right-handed alpha
Helix 10
AB1
B
211 233Right-handed alpha
Helix 11
AB2
B
235 237Right-handed 310
Helix 12
AB3
B
238 249Right-handed alpha
Helix 13
AB4
B
253 258Right-handed alpha
Helix 14
AB5
B
259 275Right-handed alpha
Helix 15
AB6
B
280 301Right-handed alpha
Helix 16
AB7
B
301 306Right-handed alpha
Helix 17
AB8
B
307 309Right-handed 310
Helix 18
AB9
B
315 320Right-handed alpha
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There are 6 sheets in PDB entry 6INE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2070 2071first strand
Strand 2
A
2209 2210parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2076 2077first strand
Strand 2
A
2172 2175parallel
Strand 3
A
2202 2205anti-parallel
Strand 4
A
2195 2197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2142 2147first strand
Strand 2
A
2151 2156anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2165 2168first strand
Strand 2
A
2234 2241anti-parallel
Strand 3
A
2224 2231anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2217 2218first strand
Strand 2
A
2252 2253parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
311 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il