Analysis of interatomic Contacts of Structural Units in PDB entry:
6INX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6INX entry

There is 1 chain in PDB entry 6INX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LEU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6INX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed 310
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
49 51Right-handed 310
Helix 4
AA4
A
52 60Right-handed alpha
Helix 5
AA5
A
76 82Right-handed alpha
Helix 6
AA6
A
83 101Right-handed alpha
Helix 7
AA7
A
125 149Right-handed alpha
Helix 8
AA8
A
161 167Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
175 177Right-handed 310
Helix 11
AB2
A
212 223Right-handed alpha
Helix 12
AB3
A
226 228Right-handed 310
Helix 13
AB4
A
247 251Right-handed 310
Helix 14
AB5
A
265 272Right-handed alpha
Helix 15
AB6
A
302 317Right-handed alpha
Helix 16
AB7
A
325 329Right-handed 310
Helix 17
AB8
A
332 342Right-handed alpha
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There are 2 sheets in PDB entry 6INX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
64 70parallel
Strand 4
A
105 109parallel
Strand 5
A
153 159parallel
Strand 6
A
179 183parallel
Strand 7
A
230 235parallel
Strand 8
A
320 324parallel
Strand 9
A
6 12parallel
Strand 10
A
29 38parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
297 299anti-parallel
Strand 4
A
288 292anti-parallel
Strand 5
A
279 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il