Analysis of interatomic Contacts of Structural Units in PDB entry:
6IO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IO6 entry

There is 1 chain in PDB entry 6IO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6IO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
102 112Right-handed alpha
Helix 6
AA6
A
151 167Right-handed alpha
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
199 203Right-handed 310
Helix 9
AA9
A
210 219Right-handed alpha
Helix 10
AB1
A
220 223Right-handed 310
Helix 11
AB2
A
252 266Right-handed alpha
Helix 12
AB3
A
280 285Right-handed 310
Helix 13
AB4
A
315 330Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6IO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
4 8parallel
Strand 6
A
92 95parallel
Strand 7
A
116 119parallel
Strand 8
A
144 146parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
226 232anti-parallel
Strand 3
A
168 177parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
305 312anti-parallel
Strand 6
A
291 294anti-parallel
Strand 7
A
272 275parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
226 232anti-parallel
Strand 3
A
168 177parallel
Strand 4
A
239 247anti-parallel
Strand 5
A
305 312anti-parallel
Strand 6
A
299 302anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il