Analysis of interatomic Contacts of Structural Units in PDB entry:
6IOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IOE entry

There are 2 chains in PDB entry 6IOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22SER 490
B
 THR 22SER 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6IOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 55Right-handed 310
Helix 2
AA2
A
134 138Right-handed 310
Helix 3
AA3
A
199 204Right-handed alpha
Helix 4
AA4
A
216 220Right-handed 310
Helix 5
AA5
A
239 249Right-handed alpha
Helix 6
AA6
A
259 270Right-handed alpha
Helix 7
AA7
A
321 324Right-handed 310
Helix 8
AA8
A
383 393Right-handed alpha
Helix 9
AA9
A
403 414Right-handed alpha
Helix 10
AB1
B
53 55Right-handed 310
Helix 11
AB2
B
199 204Right-handed alpha
Helix 12
AB3
B
215 220Right-handed 310
Helix 13
AB4
B
239 249Right-handed alpha
Helix 14
AB5
B
259 270Right-handed alpha
Helix 15
AB6
B
321 324Right-handed 310
Helix 16
AB7
B
383 393Right-handed alpha
Helix 17
AB8
B
403 414Right-handed alpha
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There are 20 sheets in PDB entry 6IOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
57 60anti-parallel
Strand 5
A
66 68anti-parallel
Strand 6
A
73 76anti-parallel
Strand 7
A
87 89anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
140 141anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
116 118anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
107 110anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
177 179anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
206 208anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
229 238anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
277 282parallel
Strand 5
A
291 292anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
229 238anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
277 282parallel
Strand 5
A
316 320anti-parallel
Strand 6
A
326 329anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
372 382anti-parallel
Strand 3
A
482 489anti-parallel
Strand 4
A
421 427parallel
Strand 5
A
436 437anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
482 489anti-parallel
Strand 3
A
421 427parallel
Strand 4
A
463 467anti-parallel
Strand 5
A
472 476anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
66 68anti-parallel
Strand 4
B
73 76anti-parallel
Strand 5
B
87 89anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
44 47anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
109 110anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
128 130anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
177 179anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
206 208anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
229 238anti-parallel
Strand 3
B
336 342anti-parallel
Strand 4
B
277 282parallel
Strand 5
B
291 292anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
229 238anti-parallel
Strand 3
B
336 342anti-parallel
Strand 4
B
277 282parallel
Strand 5
B
316 319anti-parallel
Strand 6
B
327 330anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
372 382anti-parallel
Strand 3
B
482 489anti-parallel
Strand 4
B
421 427parallel
Strand 5
B
436 437anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 398first strand
Strand 2
B
482 489anti-parallel
Strand 3
B
421 427parallel
Strand 4
B
463 467anti-parallel
Strand 5
B
473 476anti-parallel
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