Analysis of interatomic Contacts of Structural Units in PDB entry:
6IOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IOW entry

There are 2 chains in PDB entry 6IOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3GLU 335
B
 GLY -3GLN 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6IOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 14Right-handed alpha
Helix 2
AA2
A
25 38Right-handed alpha
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
77 90Right-handed alpha
Helix 5
AA5
A
91 93Right-handed 310
Helix 6
AA6
A
95 103Right-handed alpha
Helix 7
AA7
A
105 116Right-handed alpha
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
181 201Right-handed alpha
Helix 10
AB1
A
219 236Right-handed alpha
Helix 11
AB2
A
246 252Right-handed alpha
Helix 12
AB3
A
252 260Right-handed alpha
Helix 13
AB4
A
276 292Right-handed alpha
Helix 14
AB5
A
315 335Right-handed alpha
Helix 15
AB6
B
-1 1Right-handed 310
Helix 16
AB7
B
2 14Right-handed alpha
Helix 17
AB8
B
25 38Right-handed alpha
Helix 18
AB9
B
48 60Right-handed alpha
Helix 19
AC1
B
77 90Right-handed alpha
Helix 20
AC2
B
95 103Right-handed alpha
Helix 21
AC3
B
105 116Right-handed alpha
Helix 22
AC4
B
129 141Right-handed alpha
Helix 23
AC5
B
181 201Right-handed alpha
Helix 24
AC6
B
219 236Right-handed alpha
Helix 25
AC7
B
246 252Right-handed alpha
Helix 26
AC8
B
252 260Right-handed alpha
Helix 27
AC9
B
276 292Right-handed alpha
Helix 28
AD1
B
315 336Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6IOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
42 46parallel
Strand 3
A
17 20parallel
Strand 4
A
121 124parallel
Strand 5
A
307 309parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 245first strand
Strand 2
A
205 209parallel
Strand 3
A
271 273parallel
Strand 4
A
168 172parallel
Strand 5
A
151 157anti-parallel
Strand 6
A
294 301anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
42 46parallel
Strand 3
B
17 20parallel
Strand 4
B
121 124parallel
Strand 5
B
307 309parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 245first strand
Strand 2
B
205 209parallel
Strand 3
B
271 273parallel
Strand 4
B
168 172parallel
Strand 5
B
151 157anti-parallel
Strand 6
B
294 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il