Analysis of interatomic Contacts of Structural Units in PDB entry:
6IOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IOY entry

There are 4 chains in PDB entry 6IOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LYS 398
B	HIS -2	LYS 398
C	ALA 0	LEU 397
D	ALA 0	LEU 397

There are 80 helices in PDB entry 6IOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	73	Right-handed alpha
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	117	120	Right-handed 310
Helix 5	AA5	A	123	138	Right-handed alpha
Helix 6	AA6	A	149	155	Right-handed 310
Helix 7	AA7	A	156	161	Right-handed alpha
Helix 8	AA8	A	165	173	Right-handed alpha
Helix 9	AA9	A	180	196	Right-handed alpha
Helix 10	AB1	A	198	201	Right-handed 310
Helix 11	AB2	A	246	257	Right-handed alpha
Helix 12	AB3	A	260	271	Right-handed alpha
Helix 13	AB4	A	272	279	Right-handed alpha
Helix 14	AB5	A	283	293	Right-handed alpha
Helix 15	AB6	A	295	321	Right-handed alpha
Helix 16	AB7	A	330	336	Right-handed alpha
Helix 17	AB8	A	336	345	Right-handed alpha
Helix 18	AB9	A	347	351	Right-handed 310
Helix 19	AC1	A	355	360	Right-handed alpha
Helix 20	AC2	A	384	398	Right-handed alpha
Helix 21	AC3	B	59	73	Right-handed alpha
Helix 22	AC4	B	81	85	Right-handed 310
Helix 23	AC5	B	106	116	Right-handed alpha
Helix 24	AC6	B	117	120	Right-handed 310
Helix 25	AC7	B	123	138	Right-handed alpha
Helix 26	AC8	B	149	155	Right-handed 310
Helix 27	AC9	B	156	161	Right-handed alpha
Helix 28	AD1	B	165	173	Right-handed alpha
Helix 29	AD2	B	180	196	Right-handed alpha
Helix 30	AD3	B	198	201	Right-handed 310
Helix 31	AD4	B	246	258	Right-handed alpha
Helix 32	AD5	B	260	271	Right-handed alpha
Helix 33	AD6	B	272	279	Right-handed alpha
Helix 34	AD7	B	283	293	Right-handed alpha
Helix 35	AD8	B	295	321	Right-handed alpha
Helix 36	AD9	B	330	336	Right-handed alpha
Helix 37	AE1	B	336	345	Right-handed alpha
Helix 38	AE2	B	347	351	Right-handed 310
Helix 39	AE3	B	355	360	Right-handed alpha
Helix 40	AE4	B	384	398	Right-handed alpha
Helix 41	AE5	C	59	73	Right-handed alpha
Helix 42	AE6	C	81	85	Right-handed 310
Helix 43	AE7	C	106	116	Right-handed alpha
Helix 44	AE8	C	117	120	Right-handed 310
Helix 45	AE9	C	123	138	Right-handed alpha
Helix 46	AF1	C	149	155	Right-handed 310
Helix 47	AF2	C	156	161	Right-handed alpha
Helix 48	AF3	C	165	173	Right-handed alpha
Helix 49	AF4	C	180	196	Right-handed alpha
Helix 50	AF5	C	198	201	Right-handed 310
Helix 51	AF6	C	246	257	Right-handed alpha
Helix 52	AF7	C	260	271	Right-handed alpha
Helix 53	AF8	C	272	279	Right-handed alpha
Helix 54	AF9	C	283	293	Right-handed alpha
Helix 55	AG1	C	295	321	Right-handed alpha
Helix 56	AG2	C	330	336	Right-handed alpha
Helix 57	AG3	C	336	345	Right-handed alpha
Helix 58	AG4	C	347	351	Right-handed 310
Helix 59	AG5	C	355	360	Right-handed alpha
Helix 60	AG6	C	384	397	Right-handed alpha
Helix 61	AG7	D	59	73	Right-handed alpha
Helix 62	AG8	D	81	85	Right-handed 310
Helix 63	AG9	D	106	116	Right-handed alpha
Helix 64	AH1	D	117	120	Right-handed 310
Helix 65	AH2	D	123	138	Right-handed alpha
Helix 66	AH3	D	149	155	Right-handed 310
Helix 67	AH4	D	156	161	Right-handed alpha
Helix 68	AH5	D	165	173	Right-handed alpha
Helix 69	AH6	D	180	196	Right-handed alpha
Helix 70	AH7	D	198	201	Right-handed 310
Helix 71	AH8	D	246	258	Right-handed alpha
Helix 72	AH9	D	260	271	Right-handed alpha
Helix 73	AI1	D	272	279	Right-handed alpha
Helix 74	AI2	D	283	293	Right-handed alpha
Helix 75	AI3	D	295	321	Right-handed alpha
Helix 76	AI4	D	330	336	Right-handed alpha
Helix 77	AI5	D	336	345	Right-handed alpha
Helix 78	AI6	D	347	351	Right-handed 310
Helix 79	AI7	D	355	360	Right-handed alpha
Helix 80	AI8	D	384	397	Right-handed alpha

There are 8 sheets in PDB entry 6IOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	24	32	anti-parallel
Strand 4	A	12	20	anti-parallel
Strand 5	A	1	9	anti-parallel
Strand 6	A	87	92	parallel
Strand 7	A	143	147	parallel
Strand 8	A	103	104	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	203	209	anti-parallel
Strand 4	A	325	329	parallel
Strand 5	A	377	380	parallel
Strand 6	A	367	368	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	24	32	anti-parallel
Strand 4	B	12	20	anti-parallel
Strand 5	B	1	9	anti-parallel
Strand 6	B	87	92	parallel
Strand 7	B	143	147	parallel
Strand 8	B	103	104	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	203	209	anti-parallel
Strand 4	B	325	329	parallel
Strand 5	B	377	380	parallel
Strand 6	B	367	368	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	40	44	anti-parallel
Strand 3	C	24	32	anti-parallel
Strand 4	C	12	20	anti-parallel
Strand 5	C	1	9	anti-parallel
Strand 6	C	87	92	parallel
Strand 7	C	143	147	parallel
Strand 8	C	103	104	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	226	first strand
Strand 2	C	213	219	anti-parallel
Strand 3	C	203	209	anti-parallel
Strand 4	C	325	329	parallel
Strand 5	C	377	380	parallel
Strand 6	C	367	368	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	40	44	anti-parallel
Strand 3	D	24	32	anti-parallel
Strand 4	D	12	20	anti-parallel
Strand 5	D	1	9	anti-parallel
Strand 6	D	87	92	parallel
Strand 7	D	143	147	parallel
Strand 8	D	103	104	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	226	first strand
Strand 2	D	213	219	anti-parallel
Strand 3	D	203	209	anti-parallel
Strand 4	D	325	329	parallel
Strand 5	D	377	380	parallel
Strand 6	D	367	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IOY