Analysis of interatomic Contacts of Structural Units in PDB entry:
6IOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IOZ entry

There are 2 chains in PDB entry 6IOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34VAL 83
A
 ALA 85PRO 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6IOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 55Right-handed 310
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
108 113Right-handed alpha
Helix 6
AA6
A
118 126Right-handed alpha
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
160 166Right-handed 310
Helix 9
AA9
A
187 195Right-handed 310
Helix 10
AB1
A
196 213Right-handed alpha
Helix 11
AB2
A
237 242Right-handed 310
Helix 12
AB3
A
243 247Right-handed 310
Helix 13
AB4
A
260 264Right-handed 310
Helix 14
AB5
A
269 272Right-handed 310
Helix 15
AB6
A
273 278Right-handed alpha
Helix 16
AB7
A
289 321Right-handed alpha
Helix 17
AB8
A
341 343Right-handed 310
Helix 18
AB9
A
351 355Right-handed alpha
Helix 19
AC1
A
405 414Right-handed alpha
Helix 20
AC2
A
438 443Right-handed 310
Helix 21
AC3
A
456 461Right-handed 310
Helix 22
AC4
A
481 485Right-handed 310
Helix 23
AC5
A
541 549Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6IOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
219 225parallel
Strand 3
A
38 44parallel
Strand 4
A
327 333parallel
Strand 5
A
359 362anti-parallel
Strand 6
A
72 74anti-parallel
Strand 7
A
395 397parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
77 78anti-parallel
Strand 3
A
401 402parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
232 235parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
345 346anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 468first strand
Strand 2
A
487 493anti-parallel
Strand 3
A
497 506anti-parallel
Strand 4
A
511 524anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il