Analysis of interatomic Contacts of Structural Units in PDB entry:
6IP2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IP2 entry

There are 6 chains in PDB entry 6IP2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 216	GLU 735
C	GLU 216	GLU 735
D	GLU 216	GLU 735
E	GLU 216	GLU 735
F	GLU 216	GLU 735
A	GLU 216	GLU 735

There are141 helices in PDB entry 6IP2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	223	231	Right-handed alpha
Helix 2	AA2	B	267	276	Right-handed alpha
Helix 3	AA3	B	329	333	Right-handed 310
Helix 4	AA4	B	348	358	Right-handed alpha
Helix 5	AA5	B	375	379	Right-handed 310
Helix 6	AA6	B	402	411	Right-handed alpha
Helix 7	AA7	B	425	433	Right-handed alpha
Helix 8	AA8	B	438	455	Right-handed alpha
Helix 9	AA9	B	476	484	Right-handed alpha
Helix 10	AB1	B	511	531	Right-handed alpha
Helix 11	AB2	B	548	559	Right-handed alpha
Helix 12	AB3	B	577	593	Right-handed alpha
Helix 13	AB4	B	604	609	Right-handed alpha
Helix 14	AB5	B	619	624	Right-handed alpha
Helix 15	AB6	B	648	655	Right-handed alpha
Helix 16	AB7	B	673	684	Right-handed alpha
Helix 17	AB8	B	687	699	Right-handed alpha
Helix 18	AB9	B	706	719	Right-handed alpha
Helix 19	AC1	B	725	730	Right-handed alpha
Helix 20	AC2	C	223	228	Right-handed alpha
Helix 21	AC3	C	230	235	Right-handed alpha
Helix 22	AC4	C	243	248	Right-handed alpha
Helix 23	AC5	C	267	272	Right-handed alpha
Helix 24	AC6	C	296	299	Right-handed 310
Helix 25	AC7	C	300	305	Right-handed alpha
Helix 26	AC8	C	306	311	Right-handed alpha
Helix 27	AC9	C	329	333	Right-handed 310
Helix 28	AD1	C	350	355	Right-handed alpha
Helix 29	AD2	C	399	414	Right-handed alpha
Helix 30	AD3	C	425	433	Right-handed alpha
Helix 31	AD4	C	437	457	Right-handed alpha
Helix 32	AD5	C	476	481	Right-handed alpha
Helix 33	AD6	C	482	485	Right-handed 310
Helix 34	AD7	C	511	531	Right-handed alpha
Helix 35	AD8	C	548	559	Right-handed alpha
Helix 36	AD9	C	569	573	Right-handed 310
Helix 37	AE1	C	577	593	Right-handed alpha
Helix 38	AE2	C	604	609	Right-handed alpha
Helix 39	AE3	C	619	625	Right-handed alpha
Helix 40	AE4	C	648	655	Right-handed alpha
Helix 41	AE5	C	672	684	Right-handed alpha
Helix 42	AE6	C	687	698	Right-handed alpha
Helix 43	AE7	C	706	719	Right-handed alpha
Helix 44	AE8	C	725	733	Right-handed alpha
Helix 45	AE9	D	223	228	Right-handed alpha
Helix 46	AF1	D	240	243	Right-handed 310
Helix 47	AF2	D	244	249	Right-handed alpha
Helix 48	AF3	D	265	277	Right-handed alpha
Helix 49	AF4	D	299	304	Right-handed alpha
Helix 50	AF5	D	306	311	Right-handed alpha
Helix 51	AF6	D	312	314	Right-handed 310
Helix 52	AF7	D	348	356	Right-handed alpha
Helix 53	AF8	D	375	379	Right-handed 310
Helix 54	AF9	D	380	384	Right-handed 310
Helix 55	AG1	D	399	411	Right-handed alpha
Helix 56	AG2	D	427	432	Right-handed alpha
Helix 57	AG3	D	437	452	Right-handed alpha
Helix 58	AG4	D	453	455	Right-handed 310
Helix 59	AG5	D	476	484	Right-handed alpha
Helix 60	AG6	D	498	502	Right-handed 310
Helix 61	AG7	D	511	530	Right-handed alpha
Helix 62	AG8	D	548	559	Right-handed alpha
Helix 63	AG9	D	569	574	Right-handed 310
Helix 64	AH1	D	577	592	Right-handed alpha
Helix 65	AH2	D	604	609	Right-handed alpha
Helix 66	AH3	D	619	624	Right-handed alpha
Helix 67	AH4	D	648	653	Right-handed alpha
Helix 68	AH5	D	672	684	Right-handed alpha
Helix 69	AH6	D	687	699	Right-handed alpha
Helix 70	AH7	D	706	718	Right-handed alpha
Helix 71	AH8	D	726	733	Right-handed alpha
Helix 72	AH9	E	223	228	Right-handed alpha
Helix 73	AI1	E	228	234	Right-handed alpha
Helix 74	AI2	E	242	248	Right-handed alpha
Helix 75	AI3	E	265	273	Right-handed alpha
Helix 76	AI4	E	274	276	Right-handed 310
Helix 77	AI5	E	296	301	Right-handed alpha
Helix 78	AI6	E	301	306	Right-handed alpha
Helix 79	AI7	E	306	312	Right-handed alpha
Helix 80	AI8	E	329	333	Right-handed 310
Helix 81	AI9	E	347	359	Right-handed alpha
Helix 82	AJ1	E	399	411	Right-handed alpha
Helix 83	AJ2	E	425	433	Right-handed alpha
Helix 84	AJ3	E	437	455	Right-handed alpha
Helix 85	AJ4	E	476	484	Right-handed alpha
Helix 86	AJ5	E	498	502	Right-handed 310
Helix 87	AJ6	E	511	531	Right-handed alpha
Helix 88	AJ7	E	548	560	Right-handed alpha
Helix 89	AJ8	E	569	573	Right-handed 310
Helix 90	AJ9	E	579	587	Right-handed alpha
Helix 91	AK1	E	604	609	Right-handed alpha
Helix 92	AK2	E	619	624	Right-handed alpha
Helix 93	AK3	E	648	655	Right-handed alpha
Helix 94	AK4	E	672	682	Right-handed alpha
Helix 95	AK5	E	687	699	Right-handed alpha
Helix 96	AK6	E	706	718	Right-handed alpha
Helix 97	AK7	E	724	734	Right-handed alpha
Helix 98	AK8	F	266	276	Right-handed alpha
Helix 99	AK9	F	288	292	Right-handed 310
Helix 100	AL1	F	297	306	Right-handed alpha
Helix 101	AL2	F	329	334	Right-handed alpha
Helix 102	AL3	F	345	349	Right-handed 310
Helix 103	AL4	F	350	355	Right-handed alpha
Helix 104	AL5	F	399	414	Right-handed alpha
Helix 105	AL6	F	425	431	Right-handed alpha
Helix 106	AL7	F	437	456	Right-handed alpha
Helix 107	AL8	F	498	503	Right-handed alpha
Helix 108	AL9	F	511	530	Right-handed alpha
Helix 109	AM1	F	548	559	Right-handed alpha
Helix 110	AM2	F	569	573	Right-handed 310
Helix 111	AM3	F	577	592	Right-handed alpha
Helix 112	AM4	F	604	609	Right-handed alpha
Helix 113	AM5	F	619	628	Right-handed alpha
Helix 114	AM6	F	648	655	Right-handed alpha
Helix 115	AM7	F	672	682	Right-handed alpha
Helix 116	AM8	F	687	699	Right-handed alpha
Helix 117	AM9	F	706	719	Right-handed alpha
Helix 118	AN1	F	724	733	Right-handed alpha
Helix 119	AN2	A	225	229	Right-handed 310
Helix 120	AN3	A	265	274	Right-handed alpha
Helix 121	AN4	A	287	292	Right-handed 310
Helix 122	AN5	A	300	311	Right-handed alpha
Helix 123	AN6	A	345	349	Right-handed 310
Helix 124	AN7	A	351	356	Right-handed alpha
Helix 125	AN8	A	375	379	Right-handed 310
Helix 126	AN9	A	399	410	Right-handed alpha
Helix 127	AO1	A	425	430	Right-handed alpha
Helix 128	AO2	A	437	452	Right-handed alpha
Helix 129	AO3	A	452	457	Right-handed alpha
Helix 130	AO4	A	498	502	Right-handed 310
Helix 131	AO5	A	511	530	Right-handed alpha
Helix 132	AO6	A	548	560	Right-handed alpha
Helix 133	AO7	A	569	573	Right-handed 310
Helix 134	AO8	A	577	592	Right-handed alpha
Helix 135	AO9	A	604	609	Right-handed alpha
Helix 136	AP1	A	619	630	Right-handed alpha
Helix 137	AP2	A	648	655	Right-handed alpha
Helix 138	AP3	A	672	684	Right-handed alpha
Helix 139	AP4	A	687	699	Right-handed alpha
Helix 140	AP5	A	706	719	Right-handed alpha
Helix 141	AP6	A	724	734	Right-handed alpha

There are 14 sheets in PDB entry 6IP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	285	first strand
Strand 2	B	324	327	parallel
Strand 3	B	368	372	parallel
Strand 4	B	255	258	parallel
Strand 5	B	391	393	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	568	first strand
Strand 2	B	598	602	parallel
Strand 3	B	640	645	parallel
Strand 4	B	536	542	parallel
Strand 5	B	663	666	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	672	first strand
Strand 2	B	702	705	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	324	327	parallel
Strand 3	C	368	372	parallel
Strand 4	C	255	258	parallel
Strand 5	C	391	393	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	568	first strand
Strand 2	C	598	602	parallel
Strand 3	C	640	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	324	326	parallel
Strand 3	D	369	370	parallel
Strand 4	D	255	258	parallel
Strand 5	D	391	393	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	645	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	324	327	parallel
Strand 3	E	368	372	parallel
Strand 4	E	256	258	parallel
Strand 5	E	391	393	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	565	568	first strand
Strand 2	E	599	602	parallel
Strand 3	E	640	645	parallel
Strand 4	E	536	542	parallel
Strand 5	E	663	666	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	258	first strand
Strand 2	F	369	372	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	325	327	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	598	602	parallel
Strand 3	F	640	645	parallel
Strand 4	F	536	541	parallel
Strand 5	F	663	665	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	368	372	parallel
Strand 3	A	324	327	parallel
Strand 4	A	282	285	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	568	first strand
Strand 2	A	599	602	parallel
Strand 3	A	640	645	parallel
Strand 4	A	536	542	parallel
Strand 5	A	663	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IP2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IP2