Analysis of interatomic Contacts of Structural Units in PDB entry:
6IP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IP4 entry

There are 3 chains in PDB entry 6IP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 93SER 563
B
 ALA 24ARG 26
B
 SER 28ALA 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6IP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 100Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
115 128Right-handed alpha
Helix 4
AA4
A
144 151Right-handed alpha
Helix 5
AA5
A
171 180Right-handed alpha
Helix 6
AA6
A
187 203Right-handed alpha
Helix 7
AA7
A
209 224Right-handed alpha
Helix 8
AA8
A
254 259Right-handed alpha
Helix 9
AA9
A
264 269Right-handed 310
Helix 10
AB1
A
317 319Right-handed 310
Helix 11
AB2
A
320 334Right-handed alpha
Helix 12
AB3
A
346 352Right-handed alpha
Helix 13
AB4
A
358 365Right-handed alpha
Helix 14
AB5
A
405 407Right-handed 310
Helix 15
AB6
A
408 422Right-handed alpha
Helix 16
AB7
A
429 442Right-handed alpha
Helix 17
AB8
A
453 485Right-handed alpha
Helix 18
AB9
A
526 530Right-handed 310
Helix 19
AC1
A
545 559Right-handed alpha
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There are 5 sheets in PDB entry 6IP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
132 136parallel
Strand 3
A
378 382anti-parallel
Strand 4
A
300 308anti-parallel
Strand 5
A
396 403anti-parallel
Strand 6
A
280 284anti-parallel
Strand 7
A
228 235anti-parallel
Strand 8
A
161 164anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
184 186anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 293first strand
Strand 2
A
388 392anti-parallel
Strand 3
A
311 315anti-parallel
Strand 4
A
370 374anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 493first strand
Strand 2
A
538 543parallel
Strand 3
A
510 513anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
506 507anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il