Analysis of interatomic Contacts of Structural Units in PDB entry:
6IPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IPV entry

There are 4 chains in PDB entry 6IPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 222
B	SER 2	GLY 222
C	SER 2	GLY 222
D	SER 2	GLY 222

There are 43 helices in PDB entry 6IPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	18	23	Right-handed 310
Helix 3	AA3	A	34	45	Right-handed alpha
Helix 4	AA4	A	52	57	Right-handed alpha
Helix 5	AA5	A	69	79	Right-handed alpha
Helix 6	AA6	A	82	87	Right-handed alpha
Helix 7	AA7	A	151	156	Right-handed alpha
Helix 8	AA8	A	169	173	Right-handed 310
Helix 9	AA9	A	180	189	Right-handed alpha
Helix 10	AB1	A	194	200	Right-handed 310
Helix 11	AB2	A	201	222	Right-handed alpha
Helix 12	AB3	B	11	15	Right-handed 310
Helix 13	AB4	B	18	23	Right-handed 310
Helix 14	AB5	B	34	45	Right-handed alpha
Helix 15	AB6	B	52	57	Right-handed alpha
Helix 16	AB7	B	69	79	Right-handed alpha
Helix 17	AB8	B	82	87	Right-handed alpha
Helix 18	AB9	B	151	156	Right-handed alpha
Helix 19	AC1	B	169	173	Right-handed 310
Helix 20	AC2	B	180	189	Right-handed alpha
Helix 21	AC3	B	194	200	Right-handed 310
Helix 22	AC4	B	201	222	Right-handed alpha
Helix 23	AC5	C	18	23	Right-handed 310
Helix 24	AC6	C	34	46	Right-handed alpha
Helix 25	AC7	C	52	57	Right-handed alpha
Helix 26	AC8	C	69	79	Right-handed alpha
Helix 27	AC9	C	82	87	Right-handed alpha
Helix 28	AD1	C	151	156	Right-handed alpha
Helix 29	AD2	C	169	173	Right-handed 310
Helix 30	AD3	C	180	189	Right-handed alpha
Helix 31	AD4	C	194	200	Right-handed 310
Helix 32	AD5	C	201	222	Right-handed alpha
Helix 33	AD6	D	11	15	Right-handed 310
Helix 34	AD7	D	18	23	Right-handed 310
Helix 35	AD8	D	34	46	Right-handed alpha
Helix 36	AD9	D	52	57	Right-handed alpha
Helix 37	AE1	D	69	79	Right-handed alpha
Helix 38	AE2	D	82	87	Right-handed alpha
Helix 39	AE3	D	151	156	Right-handed alpha
Helix 40	AE4	D	169	173	Right-handed 310
Helix 41	AE5	D	180	189	Right-handed alpha
Helix 42	AE6	D	194	200	Right-handed 310
Helix 43	AE7	D	201	222	Right-handed alpha

There are 10 sheets in PDB entry 6IPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	B	49	51	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	160	167	anti-parallel
Strand 3	A	142	150	anti-parallel
Strand 4	A	125	134	anti-parallel
Strand 5	A	112	115	anti-parallel
Strand 6	A	100	105	anti-parallel
Strand 7	A	90	97	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	160	167	anti-parallel
Strand 3	A	142	150	anti-parallel
Strand 4	A	125	134	anti-parallel
Strand 5	A	118	121	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	66	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	142	150	anti-parallel
Strand 4	B	125	134	anti-parallel
Strand 5	B	111	115	anti-parallel
Strand 6	B	100	105	anti-parallel
Strand 7	B	90	97	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	66	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	142	150	anti-parallel
Strand 4	B	125	134	anti-parallel
Strand 5	B	118	121	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	D	49	51	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	160	167	anti-parallel
Strand 3	C	142	150	anti-parallel
Strand 4	C	125	134	anti-parallel
Strand 5	C	111	115	anti-parallel
Strand 6	C	100	105	anti-parallel
Strand 7	C	90	97	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	160	167	anti-parallel
Strand 3	C	142	150	anti-parallel
Strand 4	C	125	134	anti-parallel
Strand 5	C	118	121	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	66	first strand
Strand 2	D	160	167	anti-parallel
Strand 3	D	142	150	anti-parallel
Strand 4	D	125	134	anti-parallel
Strand 5	D	112	115	anti-parallel
Strand 6	D	100	105	anti-parallel
Strand 7	D	90	97	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	66	first strand
Strand 2	D	160	167	anti-parallel
Strand 3	D	142	150	anti-parallel
Strand 4	D	125	134	anti-parallel
Strand 5	D	118	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IPV