Analysis of interatomic Contacts of Structural Units in PDB entry:
6IQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IQV entry

There are 4 chains in PDB entry 6IQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 340
B	VAL 3	LEU 340
C	MET 1	LEU 340
D	MET 1	LEU 340

There are 53 helices in PDB entry 6IQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	27	Right-handed alpha
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	88	94	Right-handed alpha
Helix 5	AA5	A	107	117	Right-handed alpha
Helix 6	AA6	A	140	144	Right-handed 310
Helix 7	AA7	A	155	173	Right-handed alpha
Helix 8	AA8	A	221	225	Right-handed 310
Helix 9	AA9	A	226	230	Right-handed 310
Helix 10	AB1	A	259	270	Right-handed alpha
Helix 11	AB2	A	285	290	Right-handed 310
Helix 12	AB3	A	300	303	Right-handed 310
Helix 13	AB4	A	323	338	Right-handed alpha
Helix 14	AB5	B	11	25	Right-handed alpha
Helix 15	AB6	B	41	51	Right-handed alpha
Helix 16	AB7	B	83	87	Right-handed 310
Helix 17	AB8	B	88	94	Right-handed alpha
Helix 18	AB9	B	107	117	Right-handed alpha
Helix 19	AC1	B	140	144	Right-handed 310
Helix 20	AC2	B	155	173	Right-handed alpha
Helix 21	AC3	B	206	210	Right-handed 310
Helix 22	AC4	B	221	225	Right-handed 310
Helix 23	AC5	B	226	230	Right-handed 310
Helix 24	AC6	B	259	270	Right-handed alpha
Helix 25	AC7	B	285	290	Right-handed 310
Helix 26	AC8	B	300	303	Right-handed 310
Helix 27	AC9	B	323	339	Right-handed alpha
Helix 28	AD1	C	11	24	Right-handed alpha
Helix 29	AD2	C	41	51	Right-handed alpha
Helix 30	AD3	C	83	87	Right-handed 310
Helix 31	AD4	C	111	117	Right-handed alpha
Helix 32	AD5	C	140	144	Right-handed 310
Helix 33	AD6	C	155	173	Right-handed alpha
Helix 34	AD7	C	206	210	Right-handed 310
Helix 35	AD8	C	221	225	Right-handed 310
Helix 36	AD9	C	226	230	Right-handed 310
Helix 37	AE1	C	259	269	Right-handed alpha
Helix 38	AE2	C	285	290	Right-handed 310
Helix 39	AE3	C	300	303	Right-handed 310
Helix 40	AE4	C	323	337	Right-handed alpha
Helix 41	AE5	C	338	340	Right-handed 310
Helix 42	AE6	D	11	25	Right-handed alpha
Helix 43	AE7	D	41	51	Right-handed alpha
Helix 44	AE8	D	83	87	Right-handed 310
Helix 45	AE9	D	107	116	Right-handed alpha
Helix 46	AF1	D	140	144	Right-handed 310
Helix 47	AF2	D	157	173	Right-handed alpha
Helix 48	AF3	D	219	225	Right-handed 310
Helix 49	AF4	D	226	230	Right-handed 310
Helix 50	AF5	D	259	270	Right-handed alpha
Helix 51	AF6	D	285	290	Right-handed 310
Helix 52	AF7	D	300	303	Right-handed 310
Helix 53	AF8	D	323	339	Right-handed alpha

There are 12 sheets in PDB entry 6IQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	68	71	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	31	37	parallel
Strand 5	A	3	8	parallel
Strand 6	A	97	100	parallel
Strand 7	A	121	124	parallel
Strand 8	A	150	152	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	233	240	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	246	254	anti-parallel
Strand 5	A	311	320	anti-parallel
Strand 6	A	296	298	anti-parallel
Strand 7	A	277	279	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	233	240	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	246	254	anti-parallel
Strand 5	A	311	320	anti-parallel
Strand 6	A	304	308	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	68	71	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	32	37	parallel
Strand 5	B	4	8	parallel
Strand 6	B	97	100	parallel
Strand 7	B	121	124	parallel
Strand 8	B	150	152	parallel
Strand 9	B	133	134	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	233	240	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	246	254	anti-parallel
Strand 5	B	311	320	anti-parallel
Strand 6	B	296	298	anti-parallel
Strand 7	B	277	279	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	233	240	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	246	254	anti-parallel
Strand 5	B	311	320	anti-parallel
Strand 6	B	304	308	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	68	71	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	33	37	parallel
Strand 5	C	5	8	parallel
Strand 6	C	98	100	parallel
Strand 7	C	122	124	parallel
Strand 8	C	150	152	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	233	240	anti-parallel
Strand 3	C	174	184	parallel
Strand 4	C	246	254	anti-parallel
Strand 5	C	311	320	anti-parallel
Strand 6	C	296	298	anti-parallel
Strand 7	C	277	279	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	233	240	anti-parallel
Strand 3	C	174	184	parallel
Strand 4	C	246	254	anti-parallel
Strand 5	C	311	320	anti-parallel
Strand 6	C	304	308	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	68	71	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	33	37	parallel
Strand 5	D	5	8	parallel
Strand 6	D	97	100	parallel
Strand 7	D	121	124	parallel
Strand 8	D	150	152	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	233	240	anti-parallel
Strand 3	D	174	184	parallel
Strand 4	D	246	254	anti-parallel
Strand 5	D	311	320	anti-parallel
Strand 6	D	296	298	anti-parallel
Strand 7	D	277	279	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	233	240	anti-parallel
Strand 3	D	174	184	parallel
Strand 4	D	246	254	anti-parallel
Strand 5	D	311	320	anti-parallel
Strand 6	D	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IQV