Analysis of interatomic Contacts of Structural Units in PDB entry:
6IRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IRE entry

There are 2 chains in PDB entry 6IRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 862ALA 1095
B
 ALA 478ALA 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6IRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
872 878Right-handed alpha
Helix 2
AA2
A
882 916Right-handed alpha
Helix 3
AA3
A
933 1014Right-handed alpha
Helix 4
AA4
A
1023 1086Right-handed alpha
Helix 5
AA5
A
1087 1092Right-handed 310
Helix 6
AA6
B
524 530Right-handed alpha
Helix 7
AA7
B
552 561Right-handed alpha
Helix 8
AA8
B
616 621Right-handed alpha
Helix 9
AA9
B
641 652Right-handed alpha
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There are 4 sheets in PDB entry 6IRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1095first strand
Strand 2
B
597 601anti-parallel
Strand 3
B
606 611anti-parallel
Strand 4
B
628 632anti-parallel
Strand 5
B
655 662anti-parallel
Strand 6
B
581 588anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1095first strand
Strand 2
B
597 601anti-parallel
Strand 3
B
606 611anti-parallel
Strand 4
B
628 632anti-parallel
Strand 5
B
635 636anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 493first strand
Strand 2
B
567 574anti-parallel
Strand 3
B
537 541anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 504first strand
Strand 2
B
516 520anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il