Analysis of interatomic Contacts of Structural Units in PDB entry:
6IS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IS0 entry

There are 2 chains in PDB entry 6IS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 178LYS 673
C
 G 3 G 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6IS0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 229Right-handed alpha
Helix 2
AA2
A
235 248Right-handed alpha
Helix 3
AA3
A
264 274Right-handed alpha
Helix 4
AA4
A
284 306Right-handed alpha
Helix 5
AA5
A
309 329Right-handed alpha
Helix 6
AA6
A
334 390Right-handed alpha
Helix 7
AA7
A
446 460Right-handed alpha
Helix 8
AA8
A
468 485Right-handed alpha
Helix 9
AA9
A
499 511Right-handed alpha
Helix 10
AB1
A
532 537Right-handed alpha
Helix 11
AB2
A
538 540Right-handed 310
Helix 12
AB3
A
544 548Right-handed 310
Helix 13
AB4
A
562 580Right-handed alpha
Helix 14
AB5
A
598 606Right-handed alpha
Helix 15
AB6
A
651 658Right-handed alpha
Helix 16
AB7
A
661 672Right-handed alpha
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There are 3 sheets in PDB entry 6IS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
189 191anti-parallel
Strand 3
A
550 557anti-parallel
Strand 4
A
514 515parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
189 191anti-parallel
Strand 3
A
550 557anti-parallel
Strand 4
A
584 591parallel
Strand 5
A
644 650anti-parallel
Strand 6
A
610 616anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 429first strand
Strand 2
A
432 437anti-parallel
Strand 3
A
440 445anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il