Analysis of interatomic Contacts of Structural Units in PDB entry:
6ISB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ISB entry

There are 3 chains in PDB entry 6ISB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ALA 223
B
 VAL 3ALA 223
C
 VAL 3ASP 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6ISB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 58Right-handed 310
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
195 199Right-handed 310
Helix 5
AA5
B
55 58Right-handed 310
Helix 6
AA6
B
81 85Right-handed 310
Helix 7
AA7
B
112 116Right-handed 310
Helix 8
AA8
B
184 186Right-handed 310
Helix 9
AA9
B
195 199Right-handed 310
Helix 10
AB1
C
55 58Right-handed 310
Helix 11
AB2
C
81 85Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6ISB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
26 34anti-parallel
Strand 4
A
86 95anti-parallel
Strand 5
A
98 107anti-parallel
Strand 6
A
5 10parallel
Strand 7
A
155 162anti-parallel
Strand 8
A
142 150anti-parallel
Strand 9
A
200 208anti-parallel
Strand 10
A
214 222anti-parallel
Strand 11
A
121 124parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
26 34anti-parallel
Strand 4
A
86 95anti-parallel
Strand 5
A
98 107anti-parallel
Strand 6
A
5 10parallel
Strand 7
A
155 162anti-parallel
Strand 8
A
169 170anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
75 77anti-parallel
Strand 3
A
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
188 191anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
26 35anti-parallel
Strand 4
B
86 95anti-parallel
Strand 5
B
98 107anti-parallel
Strand 6
B
7 10parallel
Strand 7
B
155 162anti-parallel
Strand 8
B
142 150anti-parallel
Strand 9
B
200 208anti-parallel
Strand 10
B
214 222anti-parallel
Strand 11
B
120 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
75 77anti-parallel
Strand 3
B
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
188 191anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 10first strand
Strand 2
C
98 107parallel
Strand 3
C
86 94anti-parallel
Strand 4
C
27 35anti-parallel
Strand 5
C
39 46anti-parallel
Strand 6
C
50 53anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
75 77anti-parallel
Strand 3
C
61 62anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il