Analysis of interatomic Contacts of Structural Units in PDB entry:
6ISJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ISJ entry

There is 1 chain in PDB entry 6ISJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ALA 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6ISJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
19 24Right-handed alpha
Helix 3
AA3
A
25 28Right-handed 310
Helix 4
AA4
A
34 36Right-handed 310
Helix 5
AA5
A
74 87Right-handed alpha
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
128 148Right-handed alpha
Helix 8
AA8
A
157 159Right-handed 310
Helix 9
AA9
A
193 197Right-handed 310
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
210 227Right-handed alpha
Helix 12
AB3
A
236 249Right-handed alpha
Helix 13
AB4
A
250 260Right-handed alpha
Helix 14
AB5
A
265 269Right-handed 310
Helix 15
AB6
A
279 284Right-handed 310
Helix 16
AB7
A
288 292Right-handed 310
Helix 17
AB8
A
293 302Right-handed alpha
Helix 18
AB9
A
307 311Right-handed 310
Helix 19
AC1
A
313 319Right-handed alpha
Helix 20
AC2
A
320 322Right-handed 310
Helix 21
AC3
A
323 330Right-handed alpha
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There are 3 sheets in PDB entry 6ISJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
50 57anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
108 112anti-parallel
Strand 5
A
96 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
179 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
169 172anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il