Analysis of interatomic Contacts of Structural Units in PDB entry:
6ITD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ITD entry

There is 1 chain in PDB entry 6ITD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ARG 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6ITD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
52 64Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
77 86Right-handed alpha
Helix 5
AA5
A
101 114Right-handed alpha
Helix 6
AA6
A
125 135Right-handed alpha
Helix 7
AA7
A
135 143Right-handed alpha
Helix 8
AA8
A
155 165Right-handed alpha
Helix 9
AA9
A
166 168Right-handed 310
Helix 10
AB1
A
184 189Right-handed alpha
Helix 11
AB2
A
191 197Right-handed alpha
Helix 12
AB3
A
203 209Right-handed alpha
Helix 13
AB4
A
211 222Right-handed alpha
Helix 14
AB5
A
234 242Right-handed alpha
Helix 15
AB6
A
246 248Right-handed 310
Helix 16
AB7
A
292 314Right-handed alpha
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There are 2 sheets in PDB entry 6ITD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
9 14parallel
Strand 5
A
90 93parallel
Strand 6
A
117 121parallel
Strand 7
A
144 148parallel
Strand 8
A
318 321parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
250 257anti-parallel
Strand 3
A
170 181parallel
Strand 4
A
268 274anti-parallel
Strand 5
A
280 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il