Analysis of interatomic Contacts of Structural Units in PDB entry:
6ITF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ITF entry

There are 3 chains in PDB entry 6ITF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 100PRO 337
B
 LYS 91ASP 335
C
 SER 94PHE 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6ITF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
147 153Right-handed alpha
Helix 2
AA2
A
219 225Right-handed 310
Helix 3
AA3
A
236 238Right-handed 310
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
A
328 333Right-handed 310
Helix 6
AA6
B
147 153Right-handed alpha
Helix 7
AA7
B
236 238Right-handed 310
Helix 8
AA8
B
268 273Right-handed alpha
Helix 9
AA9
B
327 333Right-handed 310
Helix 10
AB1
C
219 225Right-handed 310
Helix 11
AB2
C
236 238Right-handed 310
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There are 8 sheets in PDB entry 6ITF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 177first strand
Strand 2
A
309 323anti-parallel
Strand 3
A
334 335parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
121 129anti-parallel
Strand 6
A
139 144anti-parallel
Strand 7
A
277 279parallel
Strand 8
A
261 262anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 204first strand
Strand 2
A
210 218anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 177first strand
Strand 2
B
309 323anti-parallel
Strand 3
B
91 105anti-parallel
Strand 4
B
334 335anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 129first strand
Strand 2
B
139 144anti-parallel
Strand 3
B
277 279parallel
Strand 4
B
261 262anti-parallel
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There are 1 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 177first strand
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 115first strand
Strand 2
C
121 129anti-parallel
Strand 3
C
139 144anti-parallel
Strand 4
C
277 279parallel
Strand 5
C
261 262anti-parallel
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There are 1 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 204first strand
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