Analysis of interatomic Contacts of Structural Units in PDB entry:
6ITK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ITK entry

There are 2 chains in PDB entry 6ITK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 330
B
 SER 8GLU 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6ITK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
48 50Right-handed 310
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
78 84Right-handed alpha
Helix 5
AA5
A
103 125Right-handed alpha
Helix 6
AA6
A
137 148Right-handed alpha
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
161 177Right-handed alpha
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
211 213Right-handed 310
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
222 229Right-handed alpha
Helix 13
AB4
A
229 239Right-handed alpha
Helix 14
AB5
A
243 260Right-handed alpha
Helix 15
AB6
A
273 277Right-handed 310
Helix 16
AB7
A
303 324Right-handed alpha
Helix 17
AB8
A
325 328Right-handed 310
Helix 18
AB9
B
19 26Right-handed alpha
Helix 19
AC1
B
26 31Right-handed alpha
Helix 20
AC2
B
48 50Right-handed 310
Helix 21
AC3
B
51 64Right-handed alpha
Helix 22
AC4
B
78 84Right-handed alpha
Helix 23
AC5
B
103 125Right-handed alpha
Helix 24
AC6
B
137 148Right-handed alpha
Helix 25
AC7
B
153 155Right-handed 310
Helix 26
AC8
B
161 177Right-handed alpha
Helix 27
AC9
B
179 181Right-handed 310
Helix 28
AD1
B
211 213Right-handed 310
Helix 29
AD2
B
215 222Right-handed alpha
Helix 30
AD3
B
222 229Right-handed alpha
Helix 31
AD4
B
229 239Right-handed alpha
Helix 32
AD5
B
243 260Right-handed alpha
Helix 33
AD6
B
273 277Right-handed 310
Helix 34
AD7
B
303 324Right-handed alpha
Helix 35
AD8
B
325 328Right-handed 310
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There are 9 sheets in PDB entry 6ITK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
41 46parallel
Strand 3
A
10 14parallel
Strand 4
A
88 91parallel
Strand 5
A
130 133parallel
Strand 6
A
157 160parallel
Strand 7
A
267 270anti-parallel
Strand 8
A
282 284anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
293 296anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 76first strand
Strand 2
B
41 46parallel
Strand 3
B
10 15parallel
Strand 4
B
88 91parallel
Strand 5
B
130 133parallel
Strand 6
B
157 159parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
204 205anti-parallel
Strand 3
B
208 209anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
197 199anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
B
282 284anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 290first strand
Strand 2
B
293 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il