Analysis of interatomic Contacts of Structural Units in PDB entry:
6ITZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ITZ entry

There are 2 chains in PDB entry 6ITZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 215
B
 VAL 3LEU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6ITZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed alpha
Helix 2
AA2
A
43 55Right-handed alpha
Helix 3
AA3
A
56 62Right-handed alpha
Helix 4
AA4
A
74 90Right-handed alpha
Helix 5
AA5
A
103 109Right-handed alpha
Helix 6
AA6
A
145 163Right-handed alpha
Helix 7
AA7
A
187 199Right-handed alpha
Helix 8
AA8
B
23 28Right-handed alpha
Helix 9
AA9
B
43 63Right-handed alpha
Helix 10
AB1
B
74 89Right-handed alpha
Helix 11
AB2
B
103 109Right-handed alpha
Helix 12
AB3
B
145 163Right-handed alpha
Helix 13
AB4
B
187 199Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6ITZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
19 22anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
65 71parallel
Strand 3
A
32 37parallel
Strand 4
A
121 126anti-parallel
Strand 5
A
132 138anti-parallel
Strand 6
B
132 138anti-parallel
Strand 7
B
121 126anti-parallel
Strand 8
B
32 37anti-parallel
Strand 9
B
65 71parallel
Strand 10
B
97 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
210 213anti-parallel
Strand 3
A
204 207anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
19 22anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
211 213anti-parallel
Strand 3
B
204 205anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il