Analysis of interatomic Contacts of Structural Units in PDB entry:
6IUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IUM entry

There are 2 chains in PDB entry 6IUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 2GLY 693
A
 THR 2GLY 693
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 6IUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
25 42Right-handed alpha
Helix 2
AA2
B
68 73Right-handed 310
Helix 3
AA3
B
76 87Right-handed alpha
Helix 4
AA4
B
101 109Right-handed alpha
Helix 5
AA5
B
124 129Right-handed 310
Helix 6
AA6
B
135 145Right-handed alpha
Helix 7
AA7
B
145 156Right-handed alpha
Helix 8
AA8
B
162 165Right-handed 310
Helix 9
AA9
B
177 192Right-handed alpha
Helix 10
AB1
B
198 202Right-handed 310
Helix 11
AB2
B
208 225Right-handed alpha
Helix 12
AB3
B
228 239Right-handed alpha
Helix 13
AB4
B
240 242Right-handed 310
Helix 14
AB5
B
243 260Right-handed alpha
Helix 15
AB6
B
261 277Right-handed alpha
Helix 16
AB7
B
301 315Right-handed alpha
Helix 17
AB8
B
324 345Right-handed alpha
Helix 18
AB9
B
349 359Right-handed alpha
Helix 19
AC1
B
365 370Right-handed 310
Helix 20
AC2
B
382 397Right-handed alpha
Helix 21
AC3
B
411 418Right-handed alpha
Helix 22
AC4
B
421 423Right-handed 310
Helix 23
AC5
B
449 463Right-handed alpha
Helix 24
AC6
B
477 496Right-handed alpha
Helix 25
AC7
B
498 510Right-handed alpha
Helix 26
AC8
B
514 523Right-handed alpha
Helix 27
AC9
B
523 537Right-handed alpha
Helix 28
AD1
B
545 553Right-handed alpha
Helix 29
AD2
B
557 561Right-handed 310
Helix 30
AD3
B
577 591Right-handed alpha
Helix 31
AD4
B
599 621Right-handed alpha
Helix 32
AD5
B
626 638Right-handed alpha
Helix 33
AD6
B
641 645Right-handed 310
Helix 34
AD7
B
646 655Right-handed alpha
Helix 35
AD8
B
655 667Right-handed alpha
Helix 36
AD9
B
671 676Right-handed 310
Helix 37
AE1
B
678 687Right-handed alpha
Helix 38
AE2
A
25 42Right-handed alpha
Helix 39
AE3
A
62 66Right-handed 310
Helix 40
AE4
A
68 73Right-handed 310
Helix 41
AE5
A
76 87Right-handed alpha
Helix 42
AE6
A
101 109Right-handed alpha
Helix 43
AE7
A
124 129Right-handed 310
Helix 44
AE8
A
135 145Right-handed alpha
Helix 45
AE9
A
145 156Right-handed alpha
Helix 46
AF1
A
162 165Right-handed 310
Helix 47
AF2
A
177 192Right-handed alpha
Helix 48
AF3
A
198 202Right-handed 310
Helix 49
AF4
A
208 224Right-handed alpha
Helix 50
AF5
A
228 239Right-handed alpha
Helix 51
AF6
A
240 242Right-handed 310
Helix 52
AF7
A
243 260Right-handed alpha
Helix 53
AF8
A
261 277Right-handed alpha
Helix 54
AF9
A
301 314Right-handed alpha
Helix 55
AG1
A
324 344Right-handed alpha
Helix 56
AG2
A
349 359Right-handed alpha
Helix 57
AG3
A
365 370Right-handed 310
Helix 58
AG4
A
382 397Right-handed alpha
Helix 59
AG5
A
411 417Right-handed alpha
Helix 60
AG6
A
421 423Right-handed 310
Helix 61
AG7
A
449 463Right-handed alpha
Helix 62
AG8
A
477 496Right-handed alpha
Helix 63
AG9
A
498 510Right-handed alpha
Helix 64
AH1
A
514 523Right-handed alpha
Helix 65
AH2
A
523 537Right-handed alpha
Helix 66
AH3
A
545 553Right-handed alpha
Helix 67
AH4
A
577 592Right-handed alpha
Helix 68
AH5
A
599 621Right-handed alpha
Helix 69
AH6
A
626 638Right-handed alpha
Helix 70
AH7
A
641 645Right-handed 310
Helix 71
AH8
A
646 655Right-handed alpha
Helix 72
AH9
A
655 667Right-handed alpha
Helix 73
AI1
A
671 676Right-handed 310
Helix 74
AI2
A
678 687Right-handed alpha
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There are 8 sheets in PDB entry 6IUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 16anti-parallel
Strand 3
B
47 52parallel
Strand 4
B
91 95parallel
Strand 5
B
112 116parallel
Strand 6
B
172 174parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
120 122parallel
Strand 3
B
159 160anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 363first strand
Strand 2
B
318 321parallel
Strand 3
B
295 298parallel
Strand 4
B
374 377parallel
Strand 5
B
402 405parallel
Strand 6
B
425 430parallel
Strand 7
B
439 443anti-parallel
Strand 8
B
466 470parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 566first strand
Strand 2
B
575 576anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
47 52parallel
Strand 4
A
91 95parallel
Strand 5
A
112 116parallel
Strand 6
A
172 174parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
120 122parallel
Strand 3
A
159 160anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
318 321parallel
Strand 3
A
295 298parallel
Strand 4
A
374 377parallel
Strand 5
A
402 405parallel
Strand 6
A
425 430parallel
Strand 7
A
439 443anti-parallel
Strand 8
A
466 470parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 568first strand
Strand 2
A
571 576anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il