Analysis of interatomic Contacts of Structural Units in PDB entry:
6IVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IVZ entry

There are 3 chains in PDB entry 6IVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2GLU 392
H
 GLU 2THR 121
L
 ILE 2LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6IVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 9Right-handed 310
Helix 2
AA2
A
82 87Right-handed 310
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
131 134Right-handed 310
Helix 5
AA5
A
189 191Right-handed 310
Helix 6
AA6
A
207 212Right-handed alpha
Helix 7
AA7
A
227 230Right-handed 310
Helix 8
AA8
A
250 258Right-handed alpha
Helix 9
AA9
A
259 261Right-handed 310
Helix 10
AB1
L
79 83Right-handed 310
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There are 15 sheets in PDB entry 6IVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
30 33parallel
Strand 3
A
41 51anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
157 162anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
30 33parallel
Strand 3
A
41 51anti-parallel
Strand 4
A
273 275anti-parallel
Strand 5
A
265 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
280 288anti-parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
167 172anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
54 72anti-parallel
Strand 4
A
217 219anti-parallel
Strand 5
A
222 226anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
193 198anti-parallel
Strand 4
A
201 206anti-parallel
Strand 5
A
262 263anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
244 246anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 312first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
361 368anti-parallel
Strand 4
A
348 349anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
355 356anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
372 378anti-parallel
Strand 3
A
385 391anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 8first strand
Strand 2
H
18 26anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
47 52anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
92 102anti-parallel
Strand 5
H
107 114anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
47 52anti-parallel
Strand 3
H
34 40anti-parallel
Strand 4
H
92 102anti-parallel
Strand 5
H
118 120anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 65anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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