Analysis of interatomic Contacts of Structural Units in PDB entry:
6IX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IX5 entry

There are 2 chains in PDB entry 6IX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLN 387
B
 SER -1GLN 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6IX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 17Right-handed alpha
Helix 2
AA2
A
19 38Right-handed alpha
Helix 3
AA3
A
39 50Right-handed alpha
Helix 4
AA4
A
51 64Right-handed alpha
Helix 5
AA5
A
64 72Right-handed alpha
Helix 6
AA6
A
77 86Right-handed alpha
Helix 7
AA7
A
88 102Right-handed alpha
Helix 8
AA8
A
116 124Right-handed alpha
Helix 9
AA9
A
124 137Right-handed alpha
Helix 10
AB1
A
137 152Right-handed alpha
Helix 11
AB2
A
163 169Right-handed alpha
Helix 12
AB3
A
174 180Right-handed alpha
Helix 13
AB4
A
182 193Right-handed alpha
Helix 14
AB5
A
200 204Right-handed 310
Helix 15
AB6
A
206 212Right-handed alpha
Helix 16
AB7
A
231 241Right-handed alpha
Helix 17
AB8
A
253 261Right-handed alpha
Helix 18
AB9
A
262 264Right-handed 310
Helix 19
AC1
A
293 297Right-handed 310
Helix 20
AC2
A
298 310Right-handed alpha
Helix 21
AC3
A
311 313Right-handed 310
Helix 22
AC4
A
332 347Right-handed alpha
Helix 23
AC5
A
352 363Right-handed alpha
Helix 24
AC6
B
0 17Right-handed alpha
Helix 25
AC7
B
19 38Right-handed alpha
Helix 26
AC8
B
39 50Right-handed alpha
Helix 27
AC9
B
51 64Right-handed alpha
Helix 28
AD1
B
64 71Right-handed alpha
Helix 29
AD2
B
77 86Right-handed alpha
Helix 30
AD3
B
88 102Right-handed alpha
Helix 31
AD4
B
116 124Right-handed alpha
Helix 32
AD5
B
124 137Right-handed alpha
Helix 33
AD6
B
137 152Right-handed alpha
Helix 34
AD7
B
163 170Right-handed alpha
Helix 35
AD8
B
174 180Right-handed alpha
Helix 36
AD9
B
182 193Right-handed alpha
Helix 37
AE1
B
200 204Right-handed 310
Helix 38
AE2
B
206 212Right-handed alpha
Helix 39
AE3
B
231 241Right-handed alpha
Helix 40
AE4
B
253 261Right-handed alpha
Helix 41
AE5
B
262 264Right-handed 310
Helix 42
AE6
B
293 297Right-handed 310
Helix 43
AE7
B
298 310Right-handed alpha
Helix 44
AE8
B
311 313Right-handed 310
Helix 45
AE9
B
332 347Right-handed alpha
Helix 46
AF1
B
352 363Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6IX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
247 252parallel
Strand 3
A
221 226parallel
Strand 4
A
287 291parallel
Strand 5
A
318 324parallel
Strand 6
A
379 386anti-parallel
Strand 7
A
365 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 273first strand
Strand 2
B
247 252parallel
Strand 3
B
221 226parallel
Strand 4
B
287 291parallel
Strand 5
B
318 324parallel
Strand 6
B
379 386anti-parallel
Strand 7
B
365 372anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il