Analysis of interatomic Contacts of Structural Units in PDB entry:
6IXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IXJ entry

There are 12 chains in PDB entry 6IXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	ASP 254
B	SER 4	ASP 254
C	SER 4	ARG 253
D	SER 4	ASP 254
E	SER 4	ASP 254
F	SER 4	ASP 254
G	SER 4	ASP 254
H	SER 4	ASP 254
I	SER 4	ASP 254
J	SER 4	ASP 254
K	SER 4	ASP 254
L	SER 4	ASP 254

There are136 helices in PDB entry 6IXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	63	73	Right-handed alpha
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	101	113	Right-handed alpha
Helix 6	AA6	A	113	131	Right-handed alpha
Helix 7	AA7	A	141	145	Right-handed 310
Helix 8	AA8	A	151	172	Right-handed alpha
Helix 9	AA9	A	190	196	Right-handed alpha
Helix 10	AB1	A	201	206	Right-handed alpha
Helix 11	AB2	A	214	227	Right-handed alpha
Helix 12	AB3	B	14	26	Right-handed alpha
Helix 13	AB4	B	37	49	Right-handed alpha
Helix 14	AB5	B	63	73	Right-handed alpha
Helix 15	AB6	B	96	100	Right-handed 310
Helix 16	AB7	B	101	113	Right-handed alpha
Helix 17	AB8	B	113	131	Right-handed alpha
Helix 18	AB9	B	141	145	Right-handed 310
Helix 19	AC1	B	152	172	Right-handed alpha
Helix 20	AC2	B	190	196	Right-handed alpha
Helix 21	AC3	B	199	208	Right-handed alpha
Helix 22	AC4	B	214	227	Right-handed alpha
Helix 23	AC5	C	14	26	Right-handed alpha
Helix 24	AC6	C	37	49	Right-handed alpha
Helix 25	AC7	C	63	73	Right-handed alpha
Helix 26	AC8	C	75	80	Right-handed alpha
Helix 27	AC9	C	96	100	Right-handed 310
Helix 28	AD1	C	101	113	Right-handed alpha
Helix 29	AD2	C	113	131	Right-handed alpha
Helix 30	AD3	C	141	145	Right-handed 310
Helix 31	AD4	C	151	172	Right-handed alpha
Helix 32	AD5	C	189	196	Right-handed alpha
Helix 33	AD6	C	199	208	Right-handed alpha
Helix 34	AD7	C	214	227	Right-handed alpha
Helix 35	AD8	D	14	26	Right-handed alpha
Helix 36	AD9	D	37	49	Right-handed alpha
Helix 37	AE1	D	63	73	Right-handed alpha
Helix 38	AE2	D	96	100	Right-handed 310
Helix 39	AE3	D	101	113	Right-handed alpha
Helix 40	AE4	D	113	131	Right-handed alpha
Helix 41	AE5	D	141	145	Right-handed 310
Helix 42	AE6	D	151	172	Right-handed alpha
Helix 43	AE7	D	190	196	Right-handed alpha
Helix 44	AE8	D	199	206	Right-handed alpha
Helix 45	AE9	D	214	227	Right-handed alpha
Helix 46	AF1	E	14	26	Right-handed alpha
Helix 47	AF2	E	37	49	Right-handed alpha
Helix 48	AF3	E	63	73	Right-handed alpha
Helix 49	AF4	E	75	80	Right-handed alpha
Helix 50	AF5	E	96	100	Right-handed 310
Helix 51	AF6	E	101	113	Right-handed alpha
Helix 52	AF7	E	113	129	Right-handed alpha
Helix 53	AF8	E	141	145	Right-handed 310
Helix 54	AF9	E	151	172	Right-handed alpha
Helix 55	AG1	E	189	196	Right-handed alpha
Helix 56	AG2	E	199	206	Right-handed alpha
Helix 57	AG3	E	214	227	Right-handed alpha
Helix 58	AG4	F	14	26	Right-handed alpha
Helix 59	AG5	F	37	49	Right-handed alpha
Helix 60	AG6	F	63	73	Right-handed alpha
Helix 61	AG7	F	96	100	Right-handed 310
Helix 62	AG8	F	101	113	Right-handed alpha
Helix 63	AG9	F	113	129	Right-handed alpha
Helix 64	AH1	F	141	145	Right-handed 310
Helix 65	AH2	F	152	172	Right-handed alpha
Helix 66	AH3	F	190	196	Right-handed alpha
Helix 67	AH4	F	199	206	Right-handed alpha
Helix 68	AH5	F	214	227	Right-handed alpha
Helix 69	AH6	G	14	26	Right-handed alpha
Helix 70	AH7	G	37	49	Right-handed alpha
Helix 71	AH8	G	63	73	Right-handed alpha
Helix 72	AH9	G	96	100	Right-handed 310
Helix 73	AI1	G	101	113	Right-handed alpha
Helix 74	AI2	G	113	129	Right-handed alpha
Helix 75	AI3	G	141	145	Right-handed 310
Helix 76	AI4	G	151	172	Right-handed alpha
Helix 77	AI5	G	190	196	Right-handed alpha
Helix 78	AI6	G	201	208	Right-handed alpha
Helix 79	AI7	G	214	227	Right-handed alpha
Helix 80	AI8	H	14	26	Right-handed alpha
Helix 81	AI9	H	37	49	Right-handed alpha
Helix 82	AJ1	H	63	73	Right-handed alpha
Helix 83	AJ2	H	96	100	Right-handed 310
Helix 84	AJ3	H	101	113	Right-handed alpha
Helix 85	AJ4	H	113	129	Right-handed alpha
Helix 86	AJ5	H	141	145	Right-handed 310
Helix 87	AJ6	H	151	172	Right-handed alpha
Helix 88	AJ7	H	190	196	Right-handed alpha
Helix 89	AJ8	H	199	206	Right-handed alpha
Helix 90	AJ9	H	214	227	Right-handed alpha
Helix 91	AK1	I	14	26	Right-handed alpha
Helix 92	AK2	I	37	49	Right-handed alpha
Helix 93	AK3	I	63	73	Right-handed alpha
Helix 94	AK4	I	75	80	Right-handed alpha
Helix 95	AK5	I	96	100	Right-handed 310
Helix 96	AK6	I	101	113	Right-handed alpha
Helix 97	AK7	I	113	129	Right-handed alpha
Helix 98	AK8	I	141	145	Right-handed 310
Helix 99	AK9	I	151	172	Right-handed alpha
Helix 100	AL1	I	190	196	Right-handed alpha
Helix 101	AL2	I	199	206	Right-handed alpha
Helix 102	AL3	I	214	227	Right-handed alpha
Helix 103	AL4	J	14	26	Right-handed alpha
Helix 104	AL5	J	37	49	Right-handed alpha
Helix 105	AL6	J	63	73	Right-handed alpha
Helix 106	AL7	J	96	100	Right-handed 310
Helix 107	AL8	J	101	113	Right-handed alpha
Helix 108	AL9	J	113	129	Right-handed alpha
Helix 109	AM1	J	141	145	Right-handed 310
Helix 110	AM2	J	151	172	Right-handed alpha
Helix 111	AM3	J	190	196	Right-handed alpha
Helix 112	AM4	J	199	206	Right-handed alpha
Helix 113	AM5	J	214	227	Right-handed alpha
Helix 114	AM6	K	14	26	Right-handed alpha
Helix 115	AM7	K	37	49	Right-handed alpha
Helix 116	AM8	K	63	73	Right-handed alpha
Helix 117	AM9	K	75	80	Right-handed alpha
Helix 118	AN1	K	96	100	Right-handed 310
Helix 119	AN2	K	101	113	Right-handed alpha
Helix 120	AN3	K	113	131	Right-handed alpha
Helix 121	AN4	K	141	145	Right-handed 310
Helix 122	AN5	K	152	172	Right-handed alpha
Helix 123	AN6	K	190	196	Right-handed alpha
Helix 124	AN7	K	201	206	Right-handed alpha
Helix 125	AN8	K	214	227	Right-handed alpha
Helix 126	AN9	L	14	26	Right-handed alpha
Helix 127	AO1	L	37	49	Right-handed alpha
Helix 128	AO2	L	63	73	Right-handed alpha
Helix 129	AO3	L	96	100	Right-handed 310
Helix 130	AO4	L	101	113	Right-handed alpha
Helix 131	AO5	L	113	129	Right-handed alpha
Helix 132	AO6	L	141	145	Right-handed 310
Helix 133	AO7	L	151	172	Right-handed alpha
Helix 134	AO8	L	190	196	Right-handed alpha
Helix 135	AO9	L	201	206	Right-handed alpha
Helix 136	AP1	L	214	227	Right-handed alpha

There are 16 sheets in PDB entry 6IXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	30	35	parallel
Strand 3	A	6	9	parallel
Strand 4	A	81	86	parallel
Strand 5	A	135	139	parallel
Strand 6	A	178	184	parallel
Strand 7	A	232	241	parallel
Strand 8	B	232	241	anti-parallel
Strand 9	B	178	184	parallel
Strand 10	B	135	139	parallel
Strand 11	B	81	86	parallel
Strand 12	B	6	9	parallel
Strand 13	B	30	35	parallel
Strand 14	B	54	58	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	I	249	251	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	I	244	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	H	249	251	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	H	244	246	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	30	35	parallel
Strand 3	C	6	9	parallel
Strand 4	C	81	86	parallel
Strand 5	C	135	139	parallel
Strand 6	C	178	184	parallel
Strand 7	C	236	239	parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	58	first strand
Strand 2	D	30	35	parallel
Strand 3	D	6	9	parallel
Strand 4	D	83	86	parallel
Strand 5	D	135	139	parallel
Strand 6	D	178	184	parallel
Strand 7	D	232	241	parallel
Strand 8	L	232	241	anti-parallel
Strand 9	L	178	184	parallel
Strand 10	L	135	139	parallel
Strand 11	L	81	86	parallel
Strand 12	L	6	9	parallel
Strand 13	L	30	35	parallel
Strand 14	L	54	58	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	30	35	parallel
Strand 3	E	6	9	parallel
Strand 4	E	83	86	parallel
Strand 5	E	135	139	parallel
Strand 6	E	178	184	parallel
Strand 7	E	236	239	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	L	249	251	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	251	first strand
Strand 2	L	244	246	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	58	first strand
Strand 2	F	30	35	parallel
Strand 3	F	6	9	parallel
Strand 4	F	83	86	parallel
Strand 5	F	135	139	parallel
Strand 6	F	178	184	parallel
Strand 7	F	236	239	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	246	first strand
Strand 2	J	249	251	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	251	first strand
Strand 2	J	244	246	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	58	first strand
Strand 2	G	30	35	parallel
Strand 3	G	6	9	parallel
Strand 4	G	83	86	parallel
Strand 5	G	135	139	parallel
Strand 6	G	178	184	parallel
Strand 7	G	236	239	parallel

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There are 14 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	58	first strand
Strand 2	H	30	35	parallel
Strand 3	H	6	9	parallel
Strand 4	H	83	86	parallel
Strand 5	H	135	139	parallel
Strand 6	H	178	184	parallel
Strand 7	H	232	241	parallel
Strand 8	I	232	241	anti-parallel
Strand 9	I	178	184	parallel
Strand 10	I	135	139	parallel
Strand 11	I	81	86	parallel
Strand 12	I	6	9	parallel
Strand 13	I	30	35	parallel
Strand 14	I	54	58	parallel

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There are 14 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	56	first strand
Strand 2	J	30	33	parallel
Strand 3	J	6	9	parallel
Strand 4	J	81	86	parallel
Strand 5	J	135	139	parallel
Strand 6	J	178	184	parallel
Strand 7	J	232	241	parallel
Strand 8	K	232	241	anti-parallel
Strand 9	K	178	184	parallel
Strand 10	K	135	139	parallel
Strand 11	K	83	86	parallel
Strand 12	K	6	9	parallel
Strand 13	K	30	35	parallel
Strand 14	K	54	58	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IXJ