Analysis of interatomic Contacts of Structural Units in PDB entry:
6IXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IXM entry

There are 4 chains in PDB entry 6IXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2VAL 249
B
 GLY 2VAL 249
C
 GLY 2VAL 249
D
 GLY 2VAL 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6IXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
116 133Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
153 174Right-handed alpha
Helix 9
AA9
A
191 197Right-handed 310
Helix 10
AB1
A
198 208Right-handed alpha
Helix 11
AB2
A
216 229Right-handed alpha
Helix 12
AB3
A
230 233Right-handed 310
Helix 13
AB4
A
245 249Right-handed 310
Helix 14
AB5
B
16 29Right-handed alpha
Helix 15
AB6
B
39 53Right-handed alpha
Helix 16
AB7
B
66 82Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
104 116Right-handed alpha
Helix 19
AC1
B
116 131Right-handed alpha
Helix 20
AC2
B
143 147Right-handed 310
Helix 21
AC3
B
153 174Right-handed alpha
Helix 22
AC4
B
202 208Right-handed alpha
Helix 23
AC5
B
216 229Right-handed alpha
Helix 24
AC6
B
230 233Right-handed 310
Helix 25
AC7
B
245 249Right-handed 310
Helix 26
AC8
C
16 29Right-handed alpha
Helix 27
AC9
C
39 53Right-handed alpha
Helix 28
AD1
C
66 82Right-handed alpha
Helix 29
AD2
C
99 103Right-handed 310
Helix 30
AD3
C
104 116Right-handed alpha
Helix 31
AD4
C
116 131Right-handed alpha
Helix 32
AD5
C
143 147Right-handed 310
Helix 33
AD6
C
153 174Right-handed alpha
Helix 34
AD7
C
191 197Right-handed 310
Helix 35
AD8
C
198 207Right-handed alpha
Helix 36
AD9
C
216 229Right-handed alpha
Helix 37
AE1
C
230 233Right-handed 310
Helix 38
AE2
C
245 249Right-handed 310
Helix 39
AE3
D
16 29Right-handed alpha
Helix 40
AE4
D
39 53Right-handed alpha
Helix 41
AE5
D
66 82Right-handed alpha
Helix 42
AE6
D
99 103Right-handed 310
Helix 43
AE7
D
104 116Right-handed alpha
Helix 44
AE8
D
116 133Right-handed alpha
Helix 45
AE9
D
143 147Right-handed 310
Helix 46
AF1
D
153 174Right-handed alpha
Helix 47
AF2
D
191 195Right-handed 310
Helix 48
AF3
D
198 208Right-handed alpha
Helix 49
AF4
D
216 229Right-handed alpha
Helix 50
AF5
D
230 233Right-handed 310
Helix 51
AF6
D
245 249Right-handed 310
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There are 4 sheets in PDB entry 6IXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
86 89parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
239 242parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
86 89parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
239 242parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
86 89parallel
Strand 5
C
136 141parallel
Strand 6
C
179 186parallel
Strand 7
C
239 242parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
86 89parallel
Strand 5
D
136 141parallel
Strand 6
D
179 186parallel
Strand 7
D
239 242parallel
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