Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IY6 entry

There are 12 chains in PDB entry 6IY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ASP 495
B	ASP 23	ASP 495
C	GLY 117	LYS 320
D	GLY 117	LYS 320
E	THR 3	GLU 159
F	THR 3	GLU 159
G	ASP 23	ASP 495
H	ASP 23	ASP 495
I	GLY 117	LYS 320
J	GLY 117	LYS 320
K	THR 3	GLU 159
L	THR 3	GLU 159

There are124 helices in PDB entry 6IY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	51	Right-handed 310
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	98	108	Right-handed alpha
Helix 4	AA4	A	180	187	Right-handed alpha
Helix 5	AA5	A	189	213	Right-handed alpha
Helix 6	AA6	A	250	259	Right-handed alpha
Helix 7	AA7	A	299	321	Right-handed alpha
Helix 8	AA8	A	321	330	Right-handed alpha
Helix 9	AA9	A	348	358	Right-handed alpha
Helix 10	AB1	A	369	384	Right-handed alpha
Helix 11	AB2	A	395	399	Right-handed 310
Helix 12	AB3	A	434	445	Right-handed alpha
Helix 13	AB4	A	448	451	Right-handed 310
Helix 14	AB5	A	452	458	Right-handed alpha
Helix 15	AB6	A	473	482	Right-handed alpha
Helix 16	AB7	A	485	490	Right-handed 310
Helix 17	AB8	B	47	51	Right-handed 310
Helix 18	AB9	B	52	56	Right-handed 310
Helix 19	AC1	B	98	108	Right-handed alpha
Helix 20	AC2	B	180	187	Right-handed alpha
Helix 21	AC3	B	189	213	Right-handed alpha
Helix 22	AC4	B	250	259	Right-handed alpha
Helix 23	AC5	B	299	321	Right-handed alpha
Helix 24	AC6	B	321	330	Right-handed alpha
Helix 25	AC7	B	348	358	Right-handed alpha
Helix 26	AC8	B	369	384	Right-handed alpha
Helix 27	AC9	B	395	399	Right-handed 310
Helix 28	AD1	B	434	445	Right-handed alpha
Helix 29	AD2	B	448	451	Right-handed 310
Helix 30	AD3	B	452	458	Right-handed alpha
Helix 31	AD4	B	473	482	Right-handed alpha
Helix 32	AD5	B	485	490	Right-handed 310
Helix 33	AD6	C	132	144	Right-handed alpha
Helix 34	AD7	C	162	167	Right-handed alpha
Helix 35	AD8	C	209	219	Right-handed alpha
Helix 36	AD9	C	226	243	Right-handed alpha
Helix 37	AE1	C	248	266	Right-handed alpha
Helix 38	AE2	C	275	286	Right-handed alpha
Helix 39	AE3	C	296	309	Right-handed alpha
Helix 40	AE4	C	309	318	Right-handed alpha
Helix 41	AE5	D	132	144	Right-handed alpha
Helix 42	AE6	D	162	167	Right-handed alpha
Helix 43	AE7	D	209	219	Right-handed alpha
Helix 44	AE8	D	226	243	Right-handed alpha
Helix 45	AE9	D	248	266	Right-handed alpha
Helix 46	AF1	D	275	286	Right-handed alpha
Helix 47	AF2	D	296	309	Right-handed alpha
Helix 48	AF3	D	309	318	Right-handed alpha
Helix 49	AF4	E	14	25	Right-handed alpha
Helix 50	AF5	E	50	62	Right-handed alpha
Helix 51	AF6	E	71	88	Right-handed alpha
Helix 52	AF7	E	94	106	Right-handed alpha
Helix 53	AF8	E	118	131	Right-handed alpha
Helix 54	AF9	E	131	140	Right-handed alpha
Helix 55	AG1	E	144	158	Right-handed alpha
Helix 56	AG2	F	14	25	Right-handed alpha
Helix 57	AG3	F	50	62	Right-handed alpha
Helix 58	AG4	F	71	88	Right-handed alpha
Helix 59	AG5	F	94	106	Right-handed alpha
Helix 60	AG6	F	118	131	Right-handed alpha
Helix 61	AG7	F	131	140	Right-handed alpha
Helix 62	AG8	F	144	158	Right-handed alpha
Helix 63	AG9	G	47	51	Right-handed 310
Helix 64	AH1	G	52	56	Right-handed 310
Helix 65	AH2	G	98	108	Right-handed alpha
Helix 66	AH3	G	180	187	Right-handed alpha
Helix 67	AH4	G	189	213	Right-handed alpha
Helix 68	AH5	G	250	259	Right-handed alpha
Helix 69	AH6	G	299	321	Right-handed alpha
Helix 70	AH7	G	321	330	Right-handed alpha
Helix 71	AH8	G	348	358	Right-handed alpha
Helix 72	AH9	G	369	384	Right-handed alpha
Helix 73	AI1	G	395	399	Right-handed 310
Helix 74	AI2	G	434	445	Right-handed alpha
Helix 75	AI3	G	448	451	Right-handed 310
Helix 76	AI4	G	452	458	Right-handed alpha
Helix 77	AI5	G	473	482	Right-handed alpha
Helix 78	AI6	G	485	490	Right-handed 310
Helix 79	AI7	H	47	51	Right-handed 310
Helix 80	AI8	H	52	56	Right-handed 310
Helix 81	AI9	H	98	108	Right-handed alpha
Helix 82	AJ1	H	180	187	Right-handed alpha
Helix 83	AJ2	H	189	213	Right-handed alpha
Helix 84	AJ3	H	250	259	Right-handed alpha
Helix 85	AJ4	H	299	321	Right-handed alpha
Helix 86	AJ5	H	321	330	Right-handed alpha
Helix 87	AJ6	H	348	358	Right-handed alpha
Helix 88	AJ7	H	369	384	Right-handed alpha
Helix 89	AJ8	H	395	399	Right-handed 310
Helix 90	AJ9	H	434	445	Right-handed alpha
Helix 91	AK1	H	448	451	Right-handed 310
Helix 92	AK2	H	452	458	Right-handed alpha
Helix 93	AK3	H	473	482	Right-handed alpha
Helix 94	AK4	H	485	490	Right-handed 310
Helix 95	AK5	I	132	144	Right-handed alpha
Helix 96	AK6	I	162	167	Right-handed alpha
Helix 97	AK7	I	209	219	Right-handed alpha
Helix 98	AK8	I	226	243	Right-handed alpha
Helix 99	AK9	I	248	266	Right-handed alpha
Helix 100	AL1	I	275	286	Right-handed alpha
Helix 101	AL2	I	296	309	Right-handed alpha
Helix 102	AL3	I	309	318	Right-handed alpha
Helix 103	AL4	J	132	144	Right-handed alpha
Helix 104	AL5	J	162	167	Right-handed alpha
Helix 105	AL6	J	209	219	Right-handed alpha
Helix 106	AL7	J	226	243	Right-handed alpha
Helix 107	AL8	J	248	266	Right-handed alpha
Helix 108	AL9	J	275	286	Right-handed alpha
Helix 109	AM1	J	296	309	Right-handed alpha
Helix 110	AM2	J	309	318	Right-handed alpha
Helix 111	AM3	K	14	23	Right-handed alpha
Helix 112	AM4	K	50	62	Right-handed alpha
Helix 113	AM5	K	71	88	Right-handed alpha
Helix 114	AM6	K	94	106	Right-handed alpha
Helix 115	AM7	K	118	131	Right-handed alpha
Helix 116	AM8	K	131	140	Right-handed alpha
Helix 117	AM9	K	144	158	Right-handed alpha
Helix 118	AN1	L	14	23	Right-handed alpha
Helix 119	AN2	L	50	62	Right-handed alpha
Helix 120	AN3	L	71	88	Right-handed alpha
Helix 121	AN4	L	94	106	Right-handed alpha
Helix 122	AN5	L	118	131	Right-handed alpha
Helix 123	AN6	L	131	140	Right-handed alpha
Helix 124	AN7	L	144	158	Right-handed alpha

There are 16 sheets in PDB entry 6IY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	135	146	parallel
Strand 3	A	113	122	anti-parallel
Strand 4	A	59	72	anti-parallel
Strand 5	A	75	82	anti-parallel
Strand 6	A	85	92	anti-parallel
Strand 7	A	135	146	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	264	273	parallel
Strand 3	A	284	294	anti-parallel
Strand 4	A	466	472	anti-parallel
Strand 5	A	423	431	anti-parallel
Strand 6	A	415	420	anti-parallel
Strand 7	A	388	392	anti-parallel
Strand 8	A	344	347	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	135	146	parallel
Strand 3	B	113	122	anti-parallel
Strand 4	B	59	72	anti-parallel
Strand 5	B	75	82	anti-parallel
Strand 6	B	85	92	anti-parallel
Strand 7	B	135	146	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	264	272	parallel
Strand 3	B	285	294	anti-parallel
Strand 4	B	466	472	anti-parallel
Strand 5	B	423	431	anti-parallel
Strand 6	B	415	420	anti-parallel
Strand 7	B	388	392	anti-parallel
Strand 8	B	344	347	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	154	first strand
Strand 2	C	183	189	parallel
Strand 3	C	121	126	parallel
Strand 4	C	196	198	anti-parallel
Strand 5	C	207	208	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	183	189	parallel
Strand 3	D	121	126	parallel
Strand 4	D	196	198	anti-parallel
Strand 5	D	207	208	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	35	first strand
Strand 2	E	4	9	parallel
Strand 3	E	39	41	anti-parallel
Strand 4	E	47	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	35	first strand
Strand 2	F	4	9	parallel
Strand 3	F	39	41	anti-parallel
Strand 4	F	47	48	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	135	146	parallel
Strand 3	G	113	122	anti-parallel
Strand 4	G	59	72	anti-parallel
Strand 5	G	75	82	anti-parallel
Strand 6	G	85	92	anti-parallel
Strand 7	G	135	146	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	216	217	first strand
Strand 2	G	264	271	parallel
Strand 3	G	286	294	anti-parallel
Strand 4	G	466	472	anti-parallel
Strand 5	G	423	431	anti-parallel
Strand 6	G	415	420	anti-parallel
Strand 7	G	388	392	anti-parallel
Strand 8	G	344	347	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	135	146	parallel
Strand 3	H	113	122	anti-parallel
Strand 4	H	59	72	anti-parallel
Strand 5	H	75	82	anti-parallel
Strand 6	H	85	92	anti-parallel
Strand 7	H	135	146	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	216	217	first strand
Strand 2	H	264	271	parallel
Strand 3	H	286	294	anti-parallel
Strand 4	H	466	472	anti-parallel
Strand 5	H	423	431	anti-parallel
Strand 6	H	415	420	anti-parallel
Strand 7	H	388	392	anti-parallel
Strand 8	H	344	347	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	154	first strand
Strand 2	I	183	189	parallel
Strand 3	I	121	126	parallel
Strand 4	I	196	198	anti-parallel
Strand 5	I	207	208	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	148	154	first strand
Strand 2	J	183	189	parallel
Strand 3	J	121	126	parallel
Strand 4	J	196	198	anti-parallel
Strand 5	J	207	208	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	35	first strand
Strand 2	K	4	9	parallel
Strand 3	K	39	41	anti-parallel
Strand 4	K	47	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	35	first strand
Strand 2	L	4	9	parallel
Strand 3	L	39	41	anti-parallel
Strand 4	L	47	48	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY6