Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6IY8 entry

There are 3 chains in PDB entry 6IY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 13	ALA 481
B	PHE 17	ALA 481
C	ASP 14	LEU 339

There are 91 helices in PDB entry 6IY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	56	Right-handed alpha
Helix 2	AA2	A	57	84	Right-handed alpha
Helix 3	AA3	A	88	103	Right-handed alpha
Helix 4	AA4	A	131	140	Right-handed alpha
Helix 5	AA5	A	149	165	Right-handed alpha
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	191	193	Right-handed 310
Helix 8	AA8	A	196	201	Right-handed alpha
Helix 9	AA9	A	202	204	Right-handed 310
Helix 10	AB1	A	207	224	Right-handed alpha
Helix 11	AB2	A	225	227	Right-handed 310
Helix 12	AB3	A	239	255	Right-handed alpha
Helix 13	AB4	A	268	280	Right-handed alpha
Helix 14	AB5	A	298	306	Right-handed alpha
Helix 15	AB6	A	321	326	Right-handed alpha
Helix 16	AB7	A	336	339	Right-handed 310
Helix 17	AB8	A	340	354	Right-handed alpha
Helix 18	AB9	A	383	387	Right-handed 310
Helix 19	AC1	A	389	397	Right-handed alpha
Helix 20	AC2	A	405	411	Right-handed 310
Helix 21	AC3	A	412	426	Right-handed alpha
Helix 22	AC4	A	436	445	Right-handed alpha
Helix 23	AC5	A	451	465	Right-handed alpha
Helix 24	AC6	B	17	21	Right-handed 310
Helix 25	AC7	B	25	28	Right-handed 310
Helix 26	AC8	B	42	55	Right-handed alpha
Helix 27	AC9	B	57	84	Right-handed alpha
Helix 28	AD1	B	88	103	Right-handed alpha
Helix 29	AD2	B	131	140	Right-handed alpha
Helix 30	AD3	B	149	165	Right-handed alpha
Helix 31	AD4	B	175	179	Right-handed 310
Helix 32	AD5	B	191	193	Right-handed 310
Helix 33	AD6	B	196	203	Right-handed alpha
Helix 34	AD7	B	207	227	Right-handed alpha
Helix 35	AD8	B	239	255	Right-handed alpha
Helix 36	AD9	B	268	280	Right-handed alpha
Helix 37	AE1	B	296	305	Right-handed alpha
Helix 38	AE2	B	321	326	Right-handed alpha
Helix 39	AE3	B	340	354	Right-handed alpha
Helix 40	AE4	B	378	385	Right-handed alpha
Helix 41	AE5	B	389	397	Right-handed alpha
Helix 42	AE6	B	405	411	Right-handed 310
Helix 43	AE7	B	412	429	Right-handed alpha
Helix 44	AE8	B	436	445	Right-handed alpha
Helix 45	AE9	B	452	466	Right-handed alpha
Helix 46	AF1	C	16	21	Right-handed 310
Helix 47	AF2	C	42	56	Right-handed alpha
Helix 48	AF3	C	57	84	Right-handed alpha
Helix 49	AF4	C	88	103	Right-handed alpha
Helix 50	AF5	C	131	138	Right-handed alpha
Helix 51	AF6	C	149	165	Right-handed alpha
Helix 52	AF7	C	175	179	Right-handed 310
Helix 53	AF8	C	191	193	Right-handed 310
Helix 54	AF9	C	196	201	Right-handed alpha
Helix 55	AG1	C	202	204	Right-handed 310
Helix 56	AG2	C	207	225	Right-handed alpha
Helix 57	AG3	C	239	255	Right-handed alpha
Helix 58	AG4	C	268	280	Right-handed alpha
Helix 59	AG5	C	298	306	Right-handed alpha
Helix 60	AG6	C	321	326	Right-handed alpha
Helix 61	AG7	C	336	339	Right-handed 310
Helix 62	AG8	C	340	354	Right-handed alpha
Helix 63	AG9	C	378	384	Right-handed alpha
Helix 64	AH1	C	385	387	Right-handed 310
Helix 65	AH2	C	389	397	Right-handed alpha
Helix 66	AH3	C	405	411	Right-handed 310
Helix 67	AH4	C	412	426	Right-handed alpha
Helix 68	AH5	C	436	445	Right-handed alpha
Helix 69	AH6	C	451	465	Right-handed alpha
Helix 70	AH7	D	17	21	Right-handed 310
Helix 71	AH8	D	42	55	Right-handed alpha
Helix 72	AH9	D	58	84	Right-handed alpha
Helix 73	AI1	D	88	94	Right-handed alpha
Helix 74	AI2	D	94	103	Right-handed alpha
Helix 75	AI3	D	131	138	Right-handed alpha
Helix 76	AI4	D	149	165	Right-handed alpha
Helix 77	AI5	D	175	179	Right-handed 310
Helix 78	AI6	D	191	193	Right-handed 310
Helix 79	AI7	D	196	203	Right-handed alpha
Helix 80	AI8	D	207	225	Right-handed alpha
Helix 81	AI9	D	239	255	Right-handed alpha
Helix 82	AJ1	D	268	280	Right-handed alpha
Helix 83	AJ2	D	296	306	Right-handed alpha
Helix 84	AJ3	D	321	326	Right-handed alpha
Helix 85	AJ4	D	340	354	Right-handed alpha
Helix 86	AJ5	D	378	385	Right-handed alpha
Helix 87	AJ6	D	389	397	Right-handed alpha
Helix 88	AJ7	D	405	411	Right-handed 310
Helix 89	AJ8	D	412	429	Right-handed alpha
Helix 90	AJ9	D	436	445	Right-handed alpha
Helix 91	AK1	D	452	466	Right-handed alpha

There are 15 sheets in PDB entry 6IY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	35	41	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	29	32	anti-parallel
Strand 6	B	23	24	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	116	first strand
Strand 2	A	121	129	anti-parallel
Strand 3	A	183	189	anti-parallel
Strand 4	A	168	174	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	330	334	parallel
Strand 3	A	370	375	parallel
Strand 4	A	259	262	parallel
Strand 5	A	400	402	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	365	366	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	115	first strand
Strand 2	B	122	129	anti-parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	168	174	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	330	334	parallel
Strand 3	B	370	375	parallel
Strand 4	B	259	262	parallel
Strand 5	B	400	402	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	319	320	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	365	366	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	29	32	anti-parallel
Strand 6	D	23	24	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	116	first strand
Strand 2	C	121	129	anti-parallel
Strand 3	C	183	189	anti-parallel
Strand 4	C	168	174	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	291	first strand
Strand 2	C	330	334	parallel
Strand 3	C	370	375	parallel
Strand 4	C	259	262	parallel
Strand 5	C	399	402	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	365	366	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	116	first strand
Strand 2	D	121	129	anti-parallel
Strand 3	D	183	189	anti-parallel
Strand 4	D	168	174	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	291	first strand
Strand 2	D	330	334	parallel
Strand 3	D	370	375	parallel
Strand 4	D	259	262	parallel
Strand 5	D	400	402	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	356	first strand
Strand 2	D	365	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6IY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY8