Analysis of interatomic Contacts of Structural Units in PDB entry:
6IY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IY9 entry

There are 2 chains in PDB entry 6IY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ASP 327
B
 GLU 4ASP 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6IY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
14 22Right-handed alpha
Helix 3
AA3
A
24 39Right-handed alpha
Helix 4
AA4
A
74 89Right-handed alpha
Helix 5
AA5
A
127 133Right-handed alpha
Helix 6
AA6
A
136 156Right-handed alpha
Helix 7
AA7
A
170 191Right-handed alpha
Helix 8
AA8
A
194 205Right-handed alpha
Helix 9
AA9
A
207 212Right-handed alpha
Helix 10
AB1
A
251 262Right-handed alpha
Helix 11
AB2
A
267 278Right-handed alpha
Helix 12
AB3
A
285 296Right-handed alpha
Helix 13
AB4
A
300 305Right-handed 310
Helix 14
AB5
A
314 324Right-handed alpha
Helix 15
AB6
B
5 11Right-handed alpha
Helix 16
AB7
B
15 21Right-handed 310
Helix 17
AB8
B
24 39Right-handed alpha
Helix 18
AB9
B
74 89Right-handed alpha
Helix 19
AC1
B
127 134Right-handed alpha
Helix 20
AC2
B
136 156Right-handed alpha
Helix 21
AC3
B
170 191Right-handed alpha
Helix 22
AC4
B
194 205Right-handed alpha
Helix 23
AC5
B
207 212Right-handed alpha
Helix 24
AC6
B
251 262Right-handed alpha
Helix 25
AC7
B
267 278Right-handed alpha
Helix 26
AC8
B
285 296Right-handed alpha
Helix 27
AC9
B
314 324Right-handed alpha
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There are 6 sheets in PDB entry 6IY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
65 68anti-parallel
Strand 4
A
115 119anti-parallel
Strand 5
A
99 104anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 241anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
247 250anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
65 68anti-parallel
Strand 4
B
115 119anti-parallel
Strand 5
B
99 104anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
229 232anti-parallel
Strand 3
B
237 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
247 250anti-parallel
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