Analysis of interatomic Contacts of Structural Units in PDB entry:
6IYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IYO entry

There are 2 chains in PDB entry 6IYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 421
B
 ALA 1THR 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6IYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
104 111Right-handed alpha
Helix 5
AA5
A
111 126Right-handed alpha
Helix 6
AA6
A
128 136Right-handed alpha
Helix 7
AA7
A
137 142Right-handed alpha
Helix 8
AA8
A
143 165Right-handed alpha
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
190 208Right-handed alpha
Helix 11
AB2
A
220 227Right-handed alpha
Helix 12
AB3
A
228 232Right-handed 310
Helix 13
AB4
A
252 265Right-handed alpha
Helix 14
AB5
A
280 285Right-handed 310
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
319 329Right-handed alpha
Helix 17
AB8
A
332 343Right-handed alpha
Helix 18
AB9
A
355 366Right-handed alpha
Helix 19
AC1
A
381 396Right-handed alpha
Helix 20
AC2
A
401 405Right-handed 310
Helix 21
AC3
A
407 412Right-handed alpha
Helix 22
AC4
A
417 421Right-handed 310
Helix 23
AC5
B
12 28Right-handed alpha
Helix 24
AC6
B
32 47Right-handed alpha
Helix 25
AC7
B
57 71Right-handed alpha
Helix 26
AC8
B
104 111Right-handed alpha
Helix 27
AC9
B
111 126Right-handed alpha
Helix 28
AD1
B
128 136Right-handed alpha
Helix 29
AD2
B
137 143Right-handed alpha
Helix 30
AD3
B
143 165Right-handed alpha
Helix 31
AD4
B
176 186Right-handed alpha
Helix 32
AD5
B
190 208Right-handed alpha
Helix 33
AD6
B
220 227Right-handed alpha
Helix 34
AD7
B
252 264Right-handed alpha
Helix 35
AD8
B
280 285Right-handed 310
Helix 36
AD9
B
286 296Right-handed alpha
Helix 37
AE1
B
319 329Right-handed alpha
Helix 38
AE2
B
332 343Right-handed alpha
Helix 39
AE3
B
355 365Right-handed alpha
Helix 40
AE4
B
381 396Right-handed alpha
Helix 41
AE5
B
401 405Right-handed 310
Helix 42
AE6
B
407 412Right-handed alpha
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There are 8 sheets in PDB entry 6IYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
77 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
48 55anti-parallel
Strand 3
B
4 11anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
88 93parallel
Strand 3
A
345 351parallel
Strand 4
A
371 374parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 242first strand
Strand 2
A
245 251anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
269 271anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
314 315anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
88 93parallel
Strand 3
B
345 351parallel
Strand 4
B
371 374parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 239first strand
Strand 2
B
245 251anti-parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
269 271anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
314 315anti-parallel
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