Analysis of interatomic Contacts of Structural Units in PDB entry:
6IYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IYR entry

There is 1 chain in PDB entry 6IYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PRO 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6IYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
113 118Right-handed alpha
Helix 5
AA5
A
118 133Right-handed alpha
Helix 6
AA6
A
139 146Right-handed alpha
Helix 7
AA7
A
155 177Right-handed alpha
Helix 8
AA8
A
189 198Right-handed alpha
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
218 221Right-handed 310
Helix 11
AB2
A
232 242Right-handed alpha
Helix 12
AB3
A
243 245Right-handed 310
Helix 13
AB4
A
263 277Right-handed alpha
Helix 14
AB5
A
292 297Right-handed 310
Helix 15
AB6
A
298 306Right-handed alpha
Helix 16
AB7
A
333 343Right-handed alpha
Helix 17
AB8
A
347 357Right-handed alpha
Helix 18
AB9
A
371 383Right-handed alpha
Helix 19
AC1
A
398 412Right-handed alpha
Helix 20
AC2
A
417 419Right-handed 310
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There are 5 sheets in PDB entry 6IYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
421 422parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
56 62anti-parallel
Strand 3
A
84 88anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
97 100parallel
Strand 3
A
361 364parallel
Strand 4
A
387 389parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
247 254anti-parallel
Strand 5
A
345 346parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
326 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il