Analysis of interatomic Contacts of Structural Units in PDB entry:
6IYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6IYT entry

There are 2 chains in PDB entry 6IYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1PHE 434
B
 PRO 2PRO 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6IYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
41 53Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
104 111Right-handed alpha
Helix 5
AA5
A
111 127Right-handed alpha
Helix 6
AA6
A
132 139Right-handed alpha
Helix 7
AA7
A
148 169Right-handed alpha
Helix 8
AA8
A
182 191Right-handed alpha
Helix 9
AA9
A
195 214Right-handed alpha
Helix 10
AB1
A
226 235Right-handed alpha
Helix 11
AB2
A
236 238Right-handed 310
Helix 12
AB3
A
260 274Right-handed alpha
Helix 13
AB4
A
289 294Right-handed 310
Helix 14
AB5
A
295 303Right-handed alpha
Helix 15
AB6
A
330 340Right-handed alpha
Helix 16
AB7
A
344 354Right-handed alpha
Helix 17
AB8
A
368 380Right-handed alpha
Helix 18
AB9
A
395 408Right-handed alpha
Helix 19
AC1
A
414 420Right-handed 310
Helix 20
AC2
B
19 35Right-handed alpha
Helix 21
AC3
B
42 53Right-handed alpha
Helix 22
AC4
B
66 74Right-handed alpha
Helix 23
AC5
B
104 111Right-handed alpha
Helix 24
AC6
B
111 127Right-handed alpha
Helix 25
AC7
B
132 139Right-handed alpha
Helix 26
AC8
B
148 170Right-handed alpha
Helix 27
AC9
B
182 191Right-handed alpha
Helix 28
AD1
B
195 214Right-handed alpha
Helix 29
AD2
B
226 235Right-handed alpha
Helix 30
AD3
B
236 238Right-handed 310
Helix 31
AD4
B
260 274Right-handed alpha
Helix 32
AD5
B
289 294Right-handed 310
Helix 33
AD6
B
295 303Right-handed alpha
Helix 34
AD7
B
330 340Right-handed alpha
Helix 35
AD8
B
344 354Right-handed alpha
Helix 36
AD9
B
368 379Right-handed alpha
Helix 37
AE1
B
395 409Right-handed alpha
Helix 38
AE2
B
414 420Right-handed 310
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There are 8 sheets in PDB entry 6IYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
79 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
88 93parallel
Strand 3
A
356 361parallel
Strand 4
A
384 386parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
244 251anti-parallel
Strand 5
A
342 343parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
323 324anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
79 82anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
88 93parallel
Strand 3
B
356 361parallel
Strand 4
B
384 386parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 280first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
254 259anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
342 343parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
323 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il