Analysis of interatomic Contacts of Structural Units in PDB entry:
6J06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J06 entry

There are 3 chains in PDB entry 6J06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 297	ALA 483
B	GLY 297	ALA 483
C	GLY 297	ALA 483

There are 7 helices in PDB entry 6J06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	297	307	Right-handed alpha
Helix 2	AA2	A	315	319	Right-handed 310
Helix 3	AA3	B	298	307	Right-handed alpha
Helix 4	AA4	B	315	319	Right-handed 310
Helix 5	AA5	B	395	398	Right-handed 310
Helix 6	AA6	C	298	307	Right-handed alpha
Helix 7	AA7	C	315	319	Right-handed 310

There are 9 sheets in PDB entry 6J06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	370	parallel
Strand 3	A	478	481	anti-parallel
Strand 4	A	331	334	anti-parallel
Strand 5	A	323	325	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	370	parallel
Strand 3	A	429	435	anti-parallel
Strand 4	A	440	445	anti-parallel
Strand 5	A	451	455	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	377	383	anti-parallel
Strand 4	A	400	406	anti-parallel
Strand 5	A	410	413	anti-parallel
Strand 6	A	419	421	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	370	parallel
Strand 3	B	478	481	anti-parallel
Strand 4	B	331	334	anti-parallel
Strand 5	B	323	325	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	370	parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	440	445	anti-parallel
Strand 5	B	451	455	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	464	469	anti-parallel
Strand 3	B	377	383	anti-parallel
Strand 4	B	400	406	anti-parallel
Strand 5	B	410	413	anti-parallel
Strand 6	B	419	421	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	478	481	anti-parallel
Strand 4	C	331	334	anti-parallel
Strand 5	C	323	325	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	440	445	anti-parallel
Strand 5	C	451	455	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	464	469	anti-parallel
Strand 3	C	377	383	anti-parallel
Strand 4	C	400	406	anti-parallel
Strand 5	C	410	413	anti-parallel
Strand 6	C	419	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J06

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J06