Analysis of interatomic Contacts of Structural Units in PDB entry:
6J08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J08 entry

There are 6 chains in PDB entry 6J08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1TRP 109
D
 THR 174ASN 209
B
 SER 1TRP 109
E
 GLY 175GLN 205
C
 SER 1TRP 109
F
 GLY 175ILE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6J08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 57Right-handed alpha
Helix 2
AA2
D
180 182Right-handed 310
Helix 3
AA3
B
40 57Right-handed alpha
Helix 4
AA4
E
178 182Right-handed 310
Helix 5
AA5
C
41 57Right-handed alpha
Helix 6
AA6
F
178 182Right-handed 310
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There are 6 sheets in PDB entry 6J08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 178first strand
Strand 2
A
65 66parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
92 107anti-parallel
Strand 5
A
21 29parallel
Strand 6
A
12 18anti-parallel
Strand 7
D
189 191anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 178first strand
Strand 2
A
65 66parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
92 107anti-parallel
Strand 5
A
85 89anti-parallel
Strand 6
D
199 203anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
70 78anti-parallel
Strand 3
B
92 107anti-parallel
Strand 4
B
21 29parallel
Strand 5
B
12 18anti-parallel
Strand 6
E
189 191anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
70 78anti-parallel
Strand 3
B
92 107anti-parallel
Strand 4
B
85 89anti-parallel
Strand 5
E
199 203anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
70 78anti-parallel
Strand 3
C
92 107anti-parallel
Strand 4
C
21 29parallel
Strand 5
C
12 18anti-parallel
Strand 6
F
190 191anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
70 78anti-parallel
Strand 3
C
92 107anti-parallel
Strand 4
C
85 89anti-parallel
Strand 5
F
199 203anti-parallel
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