Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J0F entry

There are 12 chains in PDB entry 6J0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ILE 293
B	LEU 2	ILE 293
C	LEU 2	ILE 293
D	LEU 2	ILE 293
E	LEU 2	ILE 293
F	LEU 2	ILE 293
a	ALA 9	ALA 148
b	ALA 9	ALA 148
c	ALA 9	ALA 148
d	ALA 9	ALA 148
e	ALA 9	ALA 148
f	ALA 9	ALA 148

There are 42 helices in PDB entry 6J0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	106	120	Right-handed alpha
Helix 3	AA3	A	141	152	Right-handed alpha
Helix 4	AA4	A	194	211	Right-handed alpha
Helix 5	AA5	A	214	220	Right-handed alpha
Helix 6	AA6	A	253	267	Right-handed alpha
Helix 7	AA7	B	6	19	Right-handed alpha
Helix 8	AA8	B	106	120	Right-handed alpha
Helix 9	AA9	B	141	152	Right-handed alpha
Helix 10	AB1	B	194	211	Right-handed alpha
Helix 11	AB2	B	214	220	Right-handed alpha
Helix 12	AB3	B	253	267	Right-handed alpha
Helix 13	AB4	C	6	19	Right-handed alpha
Helix 14	AB5	C	106	120	Right-handed alpha
Helix 15	AB6	C	141	152	Right-handed alpha
Helix 16	AB7	C	194	211	Right-handed alpha
Helix 17	AB8	C	214	220	Right-handed alpha
Helix 18	AB9	C	253	267	Right-handed alpha
Helix 19	AC1	D	6	19	Right-handed alpha
Helix 20	AC2	D	106	120	Right-handed alpha
Helix 21	AC3	D	141	152	Right-handed alpha
Helix 22	AC4	D	194	211	Right-handed alpha
Helix 23	AC5	D	214	220	Right-handed alpha
Helix 24	AC6	D	253	267	Right-handed alpha
Helix 25	AC7	E	6	19	Right-handed alpha
Helix 26	AC8	E	106	120	Right-handed alpha
Helix 27	AC9	E	141	152	Right-handed alpha
Helix 28	AD1	E	194	211	Right-handed alpha
Helix 29	AD2	E	214	220	Right-handed alpha
Helix 30	AD3	E	253	267	Right-handed alpha
Helix 31	AD4	F	6	19	Right-handed alpha
Helix 32	AD5	F	106	120	Right-handed alpha
Helix 33	AD6	F	141	152	Right-handed alpha
Helix 34	AD7	F	194	211	Right-handed alpha
Helix 35	AD8	F	214	220	Right-handed alpha
Helix 36	AD9	F	253	267	Right-handed alpha
Helix 37	AE1	a	76	82	Right-handed alpha
Helix 38	AE2	b	76	82	Right-handed alpha
Helix 39	AE3	c	76	82	Right-handed alpha
Helix 40	AE4	d	76	82	Right-handed alpha
Helix 41	AE5	e	76	82	Right-handed alpha
Helix 42	AE6	f	76	82	Right-handed alpha

There are 36 sheets in PDB entry 6J0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	43	53	parallel
Strand 3	A	79	88	anti-parallel
Strand 4	A	162	166	anti-parallel
Strand 5	A	132	135	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	71	72	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	230	first strand
Strand 2	A	241	248	anti-parallel
Strand 3	A	281	288	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	43	53	parallel
Strand 3	B	79	88	anti-parallel
Strand 4	B	162	166	anti-parallel
Strand 5	B	132	135	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	71	72	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	230	first strand
Strand 2	B	241	248	anti-parallel
Strand 3	B	281	288	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	43	53	parallel
Strand 3	C	79	88	anti-parallel
Strand 4	C	162	166	anti-parallel
Strand 5	C	132	135	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	71	72	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	230	first strand
Strand 2	C	241	248	anti-parallel
Strand 3	C	281	288	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	43	53	parallel
Strand 3	D	79	88	anti-parallel
Strand 4	D	162	166	anti-parallel
Strand 5	D	132	135	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	71	72	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	230	first strand
Strand 2	D	241	248	anti-parallel
Strand 3	D	281	288	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	29	first strand
Strand 2	E	43	53	parallel
Strand 3	E	79	88	anti-parallel
Strand 4	E	162	166	anti-parallel
Strand 5	E	132	135	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	66	first strand
Strand 2	E	71	72	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	230	first strand
Strand 2	E	241	248	anti-parallel
Strand 3	E	281	288	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	43	53	parallel
Strand 3	F	79	88	anti-parallel
Strand 4	F	162	166	anti-parallel
Strand 5	F	132	135	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	66	first strand
Strand 2	F	71	72	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	230	first strand
Strand 2	F	241	248	anti-parallel
Strand 3	F	281	288	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	26	27	first strand
Strand 2	a	19	23	anti-parallel
Strand 3	a	92	99	anti-parallel
Strand 4	a	106	121	anti-parallel
Strand 5	a	136	146	anti-parallel
Strand 6	a	62	67	anti-parallel
Strand 7	a	32	33	anti-parallel
Strand 8	b	125	126	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	26	27	first strand
Strand 2	a	19	23	anti-parallel
Strand 3	a	92	99	anti-parallel
Strand 4	a	106	121	anti-parallel
Strand 5	f	37	38	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	37	38	first strand
Strand 2	b	106	121	anti-parallel
Strand 3	b	92	99	anti-parallel
Strand 4	b	19	23	anti-parallel
Strand 5	b	26	27	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	37	38	first strand
Strand 2	b	106	121	anti-parallel
Strand 3	b	136	146	anti-parallel
Strand 4	b	62	67	anti-parallel
Strand 5	b	32	33	anti-parallel
Strand 6	c	125	126	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	40	44	first strand
Strand 2	a	54	59	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	125	126	first strand
Strand 2	f	32	33	anti-parallel
Strand 3	f	62	67	anti-parallel
Strand 4	f	136	146	anti-parallel
Strand 5	f	106	121	anti-parallel
Strand 6	e	37	38	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	125	126	first strand
Strand 2	f	32	33	anti-parallel
Strand 3	f	62	67	anti-parallel
Strand 4	f	136	146	anti-parallel
Strand 5	f	106	121	anti-parallel
Strand 6	f	92	99	anti-parallel
Strand 7	f	19	23	anti-parallel
Strand 8	f	26	27	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	37	38	first strand
Strand 2	c	106	121	anti-parallel
Strand 3	c	92	99	anti-parallel
Strand 4	c	19	23	anti-parallel
Strand 5	c	26	27	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	37	38	first strand
Strand 2	c	106	121	anti-parallel
Strand 3	c	136	146	anti-parallel
Strand 4	c	62	67	anti-parallel
Strand 5	c	32	33	anti-parallel
Strand 6	d	125	126	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	40	44	first strand
Strand 2	b	54	59	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	37	38	first strand
Strand 2	d	106	121	anti-parallel
Strand 3	d	92	99	anti-parallel
Strand 4	d	19	23	anti-parallel
Strand 5	d	26	27	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	37	38	first strand
Strand 2	d	106	121	anti-parallel
Strand 3	d	136	146	anti-parallel
Strand 4	d	62	67	anti-parallel
Strand 5	d	32	33	anti-parallel
Strand 6	e	125	126	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	40	44	first strand
Strand 2	c	54	59	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	37	38	first strand
Strand 2	e	106	121	anti-parallel
Strand 3	e	92	99	anti-parallel
Strand 4	e	19	23	anti-parallel
Strand 5	e	26	27	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	37	38	first strand
Strand 2	e	106	121	anti-parallel
Strand 3	e	136	146	anti-parallel
Strand 4	e	62	67	anti-parallel
Strand 5	e	32	33	anti-parallel
Strand 6	f	125	126	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	40	44	first strand
Strand 2	d	54	59	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	40	44	first strand
Strand 2	e	54	59	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	40	44	first strand
Strand 2	f	54	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0F