Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J0G entry

There are 4 chains in PDB entry 6J0G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 296	PRO 485
B	GLY 296	PRO 485
C	GLY 296	ILE 484
D	GLY 296	ILE 484

There are 8 helices in PDB entry 6J0G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	296	307	Right-handed alpha
Helix 2	AA2	A	396	399	Right-handed 310
Helix 3	AA3	B	297	307	Right-handed alpha
Helix 4	AA4	B	396	399	Right-handed 310
Helix 5	AA5	C	297	307	Right-handed alpha
Helix 6	AA6	C	396	399	Right-handed 310
Helix 7	AA7	D	297	307	Right-handed alpha
Helix 8	AA8	D	396	399	Right-handed 310

There are 12 sheets in PDB entry 6J0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	370	parallel
Strand 3	A	479	481	anti-parallel
Strand 4	A	331	334	anti-parallel
Strand 5	A	323	325	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	364	370	parallel
Strand 3	A	430	436	anti-parallel
Strand 4	A	441	446	anti-parallel
Strand 5	A	452	455	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	465	470	anti-parallel
Strand 3	A	377	383	anti-parallel
Strand 4	A	401	407	anti-parallel
Strand 5	A	411	414	anti-parallel
Strand 6	A	420	421	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	370	parallel
Strand 3	B	479	481	anti-parallel
Strand 4	B	331	334	anti-parallel
Strand 5	B	323	325	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	364	370	parallel
Strand 3	B	430	436	anti-parallel
Strand 4	B	441	446	anti-parallel
Strand 5	B	452	455	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	465	470	anti-parallel
Strand 3	B	377	383	anti-parallel
Strand 4	B	401	407	anti-parallel
Strand 5	B	411	414	anti-parallel
Strand 6	B	420	422	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	479	481	anti-parallel
Strand 4	C	331	334	anti-parallel
Strand 5	C	323	325	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	364	370	parallel
Strand 3	C	430	436	anti-parallel
Strand 4	C	441	446	anti-parallel
Strand 5	C	452	455	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	465	470	anti-parallel
Strand 3	C	377	383	anti-parallel
Strand 4	C	401	407	anti-parallel
Strand 5	C	411	414	anti-parallel
Strand 6	C	420	421	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	364	370	parallel
Strand 3	D	479	481	anti-parallel
Strand 4	D	331	334	anti-parallel
Strand 5	D	323	325	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	364	370	parallel
Strand 3	D	430	436	anti-parallel
Strand 4	D	441	446	anti-parallel
Strand 5	D	452	455	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	355	first strand
Strand 2	D	465	470	anti-parallel
Strand 3	D	377	383	anti-parallel
Strand 4	D	401	407	anti-parallel
Strand 5	D	411	414	anti-parallel
Strand 6	D	420	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J0G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0G