Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J0M entry

There are 3 chains in PDB entry 6J0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	THR 537
B	SER 2	THR 537
C	SER 2	THR 537

There are 21 helices in PDB entry 6J0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	60	Right-handed alpha
Helix 2	AA2	A	105	109	Right-handed 310
Helix 3	AA3	A	122	132	Right-handed alpha
Helix 4	AA4	A	159	172	Right-handed alpha
Helix 5	AA5	A	187	191	Right-handed 310
Helix 6	AA6	A	276	294	Right-handed alpha
Helix 7	AA7	A	427	429	Right-handed 310
Helix 8	AA8	B	50	60	Right-handed alpha
Helix 9	AA9	B	105	109	Right-handed 310
Helix 10	AB1	B	122	132	Right-handed alpha
Helix 11	AB2	B	159	172	Right-handed alpha
Helix 12	AB3	B	187	191	Right-handed 310
Helix 13	AB4	B	276	294	Right-handed alpha
Helix 14	AB5	B	427	429	Right-handed 310
Helix 15	AB6	C	50	60	Right-handed alpha
Helix 16	AB7	C	105	109	Right-handed 310
Helix 17	AB8	C	122	132	Right-handed alpha
Helix 18	AB9	C	159	172	Right-handed alpha
Helix 19	AC1	C	187	191	Right-handed 310
Helix 20	AC2	C	276	294	Right-handed alpha
Helix 21	AC3	C	427	429	Right-handed 310

There are 30 sheets in PDB entry 6J0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	5	9	anti-parallel
Strand 3	A	65	71	anti-parallel
Strand 4	A	76	92	anti-parallel
Strand 5	A	98	103	anti-parallel
Strand 6	A	33	39	anti-parallel
Strand 7	A	18	25	anti-parallel
Strand 8	A	333	336	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	76	92	anti-parallel
Strand 3	C	210	218	anti-parallel
Strand 4	C	296	302	anti-parallel
Strand 5	C	344	348	anti-parallel
Strand 6	C	325	330	anti-parallel
Strand 7	C	313	317	anti-parallel
Strand 8	C	195	199	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	153	155	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	182	185	parallel
Strand 3	A	174	177	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	313	317	parallel
Strand 3	A	325	330	anti-parallel
Strand 4	A	344	348	anti-parallel
Strand 5	A	296	302	anti-parallel
Strand 6	A	210	218	anti-parallel
Strand 7	B	76	92	anti-parallel
Strand 8	B	95	96	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	5	9	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	76	92	anti-parallel
Strand 5	B	98	103	anti-parallel
Strand 6	B	33	39	anti-parallel
Strand 7	B	18	25	anti-parallel
Strand 8	B	333	336	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	226	232	anti-parallel
Strand 3	A	267	270	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	369	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	396	400	anti-parallel
Strand 4	A	433	439	parallel
Strand 5	A	420	425	anti-parallel
Strand 6	A	365	369	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	B	456	459	anti-parallel
Strand 3	B	471	473	anti-parallel
Strand 4	B	478	482	anti-parallel
Strand 5	B	488	491	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	471	473	anti-parallel
Strand 4	A	456	459	anti-parallel
Strand 5	C	411	412	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	462	first strand
Strand 2	A	467	468	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	508	first strand
Strand 2	C	510	515	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	515	first strand
Strand 2	B	503	508	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	C	527	530	parallel
Strand 3	B	534	537	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	522	first strand
Strand 2	A	527	530	parallel
Strand 3	C	534	537	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	B	527	530	parallel
Strand 3	C	519	522	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	153	155	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	182	185	parallel
Strand 3	B	174	177	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	199	first strand
Strand 2	B	313	317	parallel
Strand 3	B	325	330	anti-parallel
Strand 4	B	344	348	anti-parallel
Strand 5	B	296	302	anti-parallel
Strand 6	B	210	218	anti-parallel
Strand 7	C	76	92	anti-parallel
Strand 8	C	95	96	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	5	9	anti-parallel
Strand 3	C	65	71	anti-parallel
Strand 4	C	76	92	anti-parallel
Strand 5	C	98	103	anti-parallel
Strand 6	C	33	39	anti-parallel
Strand 7	C	18	25	anti-parallel
Strand 8	C	333	336	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	226	232	anti-parallel
Strand 3	B	267	270	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	369	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	396	400	anti-parallel
Strand 4	B	433	439	parallel
Strand 5	B	420	425	anti-parallel
Strand 6	B	365	369	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	C	456	459	anti-parallel
Strand 3	C	471	473	anti-parallel
Strand 4	C	478	482	anti-parallel
Strand 5	C	488	491	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	462	first strand
Strand 2	B	467	468	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	515	first strand
Strand 2	C	503	508	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	153	155	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	182	185	parallel
Strand 3	C	174	177	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	267	270	parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	369	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	396	400	anti-parallel
Strand 4	C	433	439	parallel
Strand 5	C	420	425	anti-parallel
Strand 6	C	365	369	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	462	first strand
Strand 2	C	467	468	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0M