Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J0Q entry

There are 2 chains in PDB entry 6J0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 225GLY 540
B
 THR 224GLY 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6J0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
279 283Right-handed 310
Helix 3
AA3
A
403 407Right-handed 310
Helix 4
AA4
A
461 472Right-handed alpha
Helix 5
AA5
B
233 237Right-handed 310
Helix 6
AA6
B
279 283Right-handed 310
Helix 7
AA7
B
403 407Right-handed 310
Helix 8
AA8
B
461 472Right-handed alpha
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There are 6 sheets in PDB entry 6J0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
437 444anti-parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
512 513anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
437 444anti-parallel
Strand 3
A
503 506anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
479 485anti-parallel
Strand 6
A
521 528anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 295first strand
Strand 2
A
310 316anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
356 364anti-parallel
Strand 5
A
342 350anti-parallel
Strand 6
A
390 399anti-parallel
Strand 7
A
286 295anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 458first strand
Strand 2
B
437 444anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
512 513anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 458first strand
Strand 2
B
437 444anti-parallel
Strand 3
B
503 506anti-parallel
Strand 4
B
492 499anti-parallel
Strand 5
B
479 485anti-parallel
Strand 6
B
521 528anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 295first strand
Strand 2
B
310 316anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
B
356 364anti-parallel
Strand 5
B
342 350anti-parallel
Strand 6
B
390 399anti-parallel
Strand 7
B
286 295anti-parallel
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