Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J0T entry

There are 2 chains in PDB entry 6J0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 33	VAL 556
B	THR 33	VAL 556

There are 8 helices in PDB entry 6J0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	133	136	Right-handed 310
Helix 2	AA2	A	337	341	Right-handed 310
Helix 3	AA3	A	379	386	Right-handed alpha
Helix 4	AA4	A	470	476	Right-handed alpha
Helix 5	AA5	B	133	136	Right-handed 310
Helix 6	AA6	B	337	341	Right-handed 310
Helix 7	AA7	B	379	386	Right-handed alpha
Helix 8	AA8	B	470	476	Right-handed alpha

There are 18 sheets in PDB entry 6J0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	60	first strand
Strand 2	A	65	73	anti-parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	97	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	119	first strand
Strand 2	A	138	146	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	188	first strand
Strand 2	A	197	204	anti-parallel
Strand 3	A	209	215	anti-parallel
Strand 4	A	222	228	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	B	300	301	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	282	290	anti-parallel
Strand 3	A	264	272	anti-parallel
Strand 4	A	237	248	anti-parallel
Strand 5	A	353	360	parallel
Strand 6	A	327	331	anti-parallel
Strand 7	A	312	316	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	282	290	anti-parallel
Strand 3	A	264	272	anti-parallel
Strand 4	A	237	248	anti-parallel
Strand 5	A	353	360	parallel
Strand 6	A	370	377	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	B	230	231	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	544	553	anti-parallel
Strand 3	A	393	396	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	544	553	anti-parallel
Strand 3	A	413	422	anti-parallel
Strand 4	A	497	504	anti-parallel
Strand 5	A	507	512	anti-parallel
Strand 6	A	517	522	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	531	537	anti-parallel
Strand 3	A	435	442	anti-parallel
Strand 4	A	449	455	anti-parallel
Strand 5	A	460	464	anti-parallel
Strand 6	A	482	485	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	60	first strand
Strand 2	B	65	73	anti-parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	97	103	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	119	first strand
Strand 2	B	138	146	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	188	first strand
Strand 2	B	197	204	anti-parallel
Strand 3	B	209	215	anti-parallel
Strand 4	B	222	228	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	282	290	anti-parallel
Strand 3	B	264	272	anti-parallel
Strand 4	B	237	248	anti-parallel
Strand 5	B	354	360	parallel
Strand 6	B	327	331	anti-parallel
Strand 7	B	312	316	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	282	290	anti-parallel
Strand 3	B	264	272	anti-parallel
Strand 4	B	237	248	anti-parallel
Strand 5	B	354	360	parallel
Strand 6	B	370	376	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	544	553	anti-parallel
Strand 3	B	393	396	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	544	553	anti-parallel
Strand 3	B	414	422	anti-parallel
Strand 4	B	497	504	anti-parallel
Strand 5	B	507	512	anti-parallel
Strand 6	B	517	522	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	406	first strand
Strand 2	B	531	537	anti-parallel
Strand 3	B	435	442	anti-parallel
Strand 4	B	449	455	anti-parallel
Strand 5	B	460	464	anti-parallel
Strand 6	B	482	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0T