Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J0X entry

There are 5 chains in PDB entry 6J0X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	MET 484
E	SER 22	GLU 37
B	SER 2	ASP 485
F	SER 22	GLU 37
C	SER 2	PRO 275

There are 92 helices in PDB entry 6J0X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	20	Right-handed 310
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	46	48	Right-handed 310
Helix 4	AA4	A	56	65	Right-handed alpha
Helix 5	AA5	A	81	87	Right-handed alpha
Helix 6	AA6	A	95	106	Right-handed alpha
Helix 7	AA7	A	111	115	Right-handed 310
Helix 8	AA8	A	135	149	Right-handed alpha
Helix 9	AA9	A	171	181	Right-handed alpha
Helix 10	AB1	A	206	216	Right-handed alpha
Helix 11	AB2	A	220	227	Right-handed alpha
Helix 12	AB3	A	235	248	Right-handed alpha
Helix 13	AB4	A	280	294	Right-handed alpha
Helix 14	AB5	A	306	314	Right-handed alpha
Helix 15	AB6	A	327	337	Right-handed alpha
Helix 16	AB7	A	344	355	Right-handed alpha
Helix 17	AB8	A	359	363	Right-handed 310
Helix 18	AB9	A	364	368	Right-handed 310
Helix 19	AC1	A	389	403	Right-handed alpha
Helix 20	AC2	A	424	434	Right-handed alpha
Helix 21	AC3	A	446	456	Right-handed alpha
Helix 22	AC4	A	463	467	Right-handed 310
Helix 23	AC5	A	470	478	Right-handed 310
Helix 24	AC6	E	32	36	Right-handed 310
Helix 25	AC7	B	18	20	Right-handed 310
Helix 26	AC8	B	21	35	Right-handed alpha
Helix 27	AC9	B	56	65	Right-handed alpha
Helix 28	AD1	B	81	88	Right-handed alpha
Helix 29	AD2	B	95	106	Right-handed alpha
Helix 30	AD3	B	111	115	Right-handed 310
Helix 31	AD4	B	135	149	Right-handed alpha
Helix 32	AD5	B	172	179	Right-handed alpha
Helix 33	AD6	B	206	216	Right-handed alpha
Helix 34	AD7	B	220	227	Right-handed alpha
Helix 35	AD8	B	235	248	Right-handed alpha
Helix 36	AD9	B	280	293	Right-handed alpha
Helix 37	AE1	B	306	314	Right-handed alpha
Helix 38	AE2	B	327	337	Right-handed alpha
Helix 39	AE3	B	344	355	Right-handed alpha
Helix 40	AE4	B	359	363	Right-handed 310
Helix 41	AE5	B	364	368	Right-handed 310
Helix 42	AE6	B	389	403	Right-handed alpha
Helix 43	AE7	B	424	434	Right-handed alpha
Helix 44	AE8	B	445	455	Right-handed alpha
Helix 45	AE9	B	463	467	Right-handed 310
Helix 46	AF1	B	470	478	Right-handed 310
Helix 47	AF2	C	18	20	Right-handed 310
Helix 48	AF3	C	21	35	Right-handed alpha
Helix 49	AF4	C	56	65	Right-handed alpha
Helix 50	AF5	C	81	87	Right-handed alpha
Helix 51	AF6	C	96	106	Right-handed alpha
Helix 52	AF7	C	111	115	Right-handed 310
Helix 53	AF8	C	135	149	Right-handed alpha
Helix 54	AF9	C	171	181	Right-handed alpha
Helix 55	AG1	C	206	216	Right-handed alpha
Helix 56	AG2	C	221	227	Right-handed alpha
Helix 57	AG3	C	235	248	Right-handed alpha
Helix 58	AG4	C	254	260	Right-handed alpha
Helix 59	AG5	C	280	294	Right-handed alpha
Helix 60	AG6	C	306	314	Right-handed alpha
Helix 61	AG7	C	327	337	Right-handed alpha
Helix 62	AG8	C	344	355	Right-handed alpha
Helix 63	AG9	C	359	363	Right-handed 310
Helix 64	AH1	C	364	368	Right-handed 310
Helix 65	AH2	C	389	403	Right-handed alpha
Helix 66	AH3	C	424	434	Right-handed alpha
Helix 67	AH4	C	445	456	Right-handed alpha
Helix 68	AH5	C	463	468	Right-handed 310
Helix 69	AH6	C	470	478	Right-handed 310
Helix 70	AH7	D	18	20	Right-handed 310
Helix 71	AH8	D	21	35	Right-handed alpha
Helix 72	AH9	D	56	65	Right-handed alpha
Helix 73	AI1	D	81	87	Right-handed alpha
Helix 74	AI2	D	96	106	Right-handed alpha
Helix 75	AI3	D	111	115	Right-handed 310
Helix 76	AI4	D	135	149	Right-handed alpha
Helix 77	AI5	D	171	181	Right-handed alpha
Helix 78	AI6	D	206	216	Right-handed alpha
Helix 79	AI7	D	221	227	Right-handed alpha
Helix 80	AI8	D	235	248	Right-handed alpha
Helix 81	AI9	D	275	278	Right-handed 310
Helix 82	AJ1	D	280	294	Right-handed alpha
Helix 83	AJ2	D	306	314	Right-handed alpha
Helix 84	AJ3	D	327	337	Right-handed alpha
Helix 85	AJ4	D	344	355	Right-handed alpha
Helix 86	AJ5	D	359	363	Right-handed 310
Helix 87	AJ6	D	364	368	Right-handed 310
Helix 88	AJ7	D	389	403	Right-handed alpha
Helix 89	AJ8	D	424	435	Right-handed alpha
Helix 90	AJ9	D	445	455	Right-handed alpha
Helix 91	AK1	D	463	467	Right-handed 310
Helix 92	AK2	D	470	478	Right-handed 310

There are 20 sheets in PDB entry 6J0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	12	16	parallel
Strand 3	A	71	73	parallel
Strand 4	A	93	94	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	126	129	parallel
Strand 3	A	163	165	parallel
Strand 4	A	202	204	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	E	23	25	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	270	273	parallel
Strand 3	A	319	321	parallel
Strand 4	A	341	343	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	381	385	parallel
Strand 3	A	416	419	parallel
Strand 4	A	442	444	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	11	16	parallel
Strand 3	B	71	73	parallel
Strand 4	B	93	94	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	126	129	parallel
Strand 3	B	163	165	parallel
Strand 4	B	202	204	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	F	23	25	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	270	273	parallel
Strand 3	B	317	321	parallel
Strand 4	B	341	343	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	381	385	parallel
Strand 3	B	416	419	parallel
Strand 4	B	442	444	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	11	16	parallel
Strand 3	C	71	73	parallel
Strand 4	C	93	94	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	126	129	parallel
Strand 3	C	163	165	parallel
Strand 4	C	202	204	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	G	23	25	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	300	first strand
Strand 2	C	270	273	parallel
Strand 3	C	317	321	parallel
Strand 4	C	341	343	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	406	first strand
Strand 2	C	381	385	parallel
Strand 3	C	416	419	parallel
Strand 4	C	442	444	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	11	16	parallel
Strand 3	D	71	73	parallel
Strand 4	D	93	94	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	126	129	parallel
Strand 3	D	163	165	parallel
Strand 4	D	202	204	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	H	23	25	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	300	first strand
Strand 2	D	270	273	parallel
Strand 3	D	319	321	parallel
Strand 4	D	341	343	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	381	385	parallel
Strand 3	D	416	419	parallel
Strand 4	D	442	444	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J0X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0X