Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J0Y entry

There are 4 chains in PDB entry 6J0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1HIS 486
C
 GLY 530ASP 587
B
 SER 1HIS 486
D
 GLY 535ASP 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6J0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 20Right-handed 310
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
46 48Right-handed 310
Helix 4
AA4
A
49 53Right-handed 310
Helix 5
AA5
A
56 65Right-handed alpha
Helix 6
AA6
A
81 87Right-handed alpha
Helix 7
AA7
A
95 106Right-handed alpha
Helix 8
AA8
A
111 115Right-handed 310
Helix 9
AA9
A
135 149Right-handed alpha
Helix 10
AB1
A
172 179Right-handed alpha
Helix 11
AB2
A
206 216Right-handed alpha
Helix 12
AB3
A
220 227Right-handed alpha
Helix 13
AB4
A
235 248Right-handed alpha
Helix 14
AB5
A
255 260Right-handed alpha
Helix 15
AB6
A
280 294Right-handed alpha
Helix 16
AB7
A
306 314Right-handed alpha
Helix 17
AB8
A
327 337Right-handed alpha
Helix 18
AB9
A
344 355Right-handed alpha
Helix 19
AC1
A
359 363Right-handed 310
Helix 20
AC2
A
364 368Right-handed 310
Helix 21
AC3
A
389 403Right-handed alpha
Helix 22
AC4
A
424 435Right-handed alpha
Helix 23
AC5
A
445 456Right-handed alpha
Helix 24
AC6
A
463 467Right-handed 310
Helix 25
AC7
A
470 478Right-handed 310
Helix 26
AC8
C
545 550Right-handed 310
Helix 27
AC9
B
18 20Right-handed 310
Helix 28
AD1
B
21 35Right-handed alpha
Helix 29
AD2
B
46 48Right-handed 310
Helix 30
AD3
B
56 65Right-handed alpha
Helix 31
AD4
B
81 88Right-handed alpha
Helix 32
AD5
B
95 106Right-handed alpha
Helix 33
AD6
B
111 115Right-handed 310
Helix 34
AD7
B
135 149Right-handed alpha
Helix 35
AD8
B
172 179Right-handed alpha
Helix 36
AD9
B
206 216Right-handed alpha
Helix 37
AE1
B
220 227Right-handed alpha
Helix 38
AE2
B
235 248Right-handed alpha
Helix 39
AE3
B
280 294Right-handed alpha
Helix 40
AE4
B
306 314Right-handed alpha
Helix 41
AE5
B
327 337Right-handed alpha
Helix 42
AE6
B
344 355Right-handed alpha
Helix 43
AE7
B
359 363Right-handed 310
Helix 44
AE8
B
364 368Right-handed 310
Helix 45
AE9
B
389 403Right-handed alpha
Helix 46
AF1
B
424 435Right-handed alpha
Helix 47
AF2
B
445 456Right-handed alpha
Helix 48
AF3
B
463 467Right-handed 310
Helix 49
AF4
B
470 478Right-handed 310
Helix 50
AF5
D
545 547Right-handed 310
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There are 11 sheets in PDB entry 6J0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
11 16parallel
Strand 3
A
71 73parallel
Strand 4
A
93 94parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
126 129parallel
Strand 3
A
163 165parallel
Strand 4
A
203 204parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
196 197anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
270 273parallel
Strand 3
A
319 321parallel
Strand 4
A
341 343parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
381 385parallel
Strand 3
A
416 419parallel
Strand 4
A
442 444parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
537 543first strand
Strand 2
C
578 584anti-parallel
Strand 3
C
556 561anti-parallel
Strand 4
D
556 563anti-parallel
Strand 5
B
410 411anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
537 543first strand
Strand 2
C
578 584anti-parallel
Strand 3
C
556 561anti-parallel
Strand 4
D
556 563anti-parallel
Strand 5
D
578 584anti-parallel
Strand 6
D
537 543anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
11 16parallel
Strand 3
B
71 73parallel
Strand 4
B
93 94parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
126 129parallel
Strand 3
B
163 165parallel
Strand 4
B
203 204parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 300first strand
Strand 2
B
270 273parallel
Strand 3
B
319 321parallel
Strand 4
B
341 343parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 407first strand
Strand 2
B
381 385parallel
Strand 3
B
416 419parallel
Strand 4
B
442 444parallel
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