Analysis of interatomic Contacts of Structural Units in PDB entry:
6J0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J0Z entry

There is 1 chain in PDB entry 6J0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLU 2ALA 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6J0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
14 27Right-handed alpha
Helix 2
AA2
C
50 60Right-handed alpha
Helix 3
AA3
C
62 66Right-handed 310
Helix 4
AA4
C
98 114Right-handed alpha
Helix 5
AA5
C
161 167Right-handed alpha
Helix 6
AA6
C
232 245Right-handed alpha
Helix 7
AA7
C
278 280Right-handed 310
Helix 8
AA8
C
289 311Right-handed alpha
Helix 9
AA9
C
320 346Right-handed alpha
Helix 10
AB1
C
350 361Right-handed alpha
Helix 11
AB2
C
363 376Right-handed alpha
Helix 12
AB3
C
411 415Right-handed 310
Helix 13
AB4
C
427 433Right-handed alpha
Helix 14
AB5
C
481 487Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6J0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
31 35parallel
Strand 3
C
6 11parallel
Strand 4
C
145 154parallel
Strand 5
C
132 138anti-parallel
Strand 6
C
122 129anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
31 35parallel
Strand 3
C
6 11parallel
Strand 4
C
145 154parallel
Strand 5
C
274 276parallel
Strand 6
C
270 271anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 77first strand
Strand 2
C
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 198first strand
Strand 2
C
201 207anti-parallel
Strand 3
C
213 219anti-parallel
Strand 4
C
178 184anti-parallel
Strand 5
C
253 260anti-parallel
Strand 6
C
229 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 265first strand
Strand 2
C
282 283anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
442 445first strand
Strand 2
C
420 423parallel
Strand 3
C
458 460anti-parallel
Strand 4
C
466 468anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il