Analysis of interatomic Contacts of Structural Units in PDB entry:
6J11

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J11 entry

There are 6 chains in PDB entry 6J11 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 18	SER 353
B	TYR 18	SER 353
C	TYR 18	SER 353
H	GLY -7	SER 120
L	ASP 26	LYS 136
D	GLU 1	PHE 29

There are 30 helices in PDB entry 6J11. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	41	Right-handed 310
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	209	213	Right-handed alpha
Helix 4	AA4	A	222	231	Right-handed alpha
Helix 5	AA5	A	303	307	Right-handed 310
Helix 6	AA6	A	342	351	Right-handed alpha
Helix 7	AA7	B	37	41	Right-handed 310
Helix 8	AA8	B	49	53	Right-handed 310
Helix 9	AA9	B	104	108	Right-handed 310
Helix 10	AB1	B	209	213	Right-handed alpha
Helix 11	AB2	B	222	231	Right-handed alpha
Helix 12	AB3	B	303	307	Right-handed 310
Helix 13	AB4	B	342	353	Right-handed alpha
Helix 14	AB5	C	37	41	Right-handed 310
Helix 15	AB6	C	49	53	Right-handed 310
Helix 16	AB7	C	209	214	Right-handed alpha
Helix 17	AB8	C	222	231	Right-handed alpha
Helix 18	AB9	C	342	352	Right-handed alpha
Helix 19	AC1	H	28	32	Right-handed 310
Helix 20	AC2	H	62	65	Right-handed 310
Helix 21	AC3	H	87	91	Right-handed 310
Helix 22	AC4	L	108	112	Right-handed 310
Helix 23	AC5	D	28	32	Right-handed 310
Helix 24	AC6	D	62	65	Right-handed 310
Helix 25	AC7	D	87	91	Right-handed 310
Helix 26	AC8	E	108	112	Right-handed 310
Helix 27	AC9	F	28	32	Right-handed 310
Helix 28	AD1	F	62	65	Right-handed 310
Helix 29	AD2	F	87	91	Right-handed 310
Helix 30	AD3	G	108	112	Right-handed 310

There are 43 sheets in PDB entry 6J11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	100	102	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	75	first strand
Strand 2	A	319	327	anti-parallel
Strand 3	A	333	338	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	313	317	anti-parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	252	259	anti-parallel
Strand 5	A	262	267	anti-parallel
Strand 6	A	279	284	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	298	300	parallel
Strand 3	A	206	208	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	147	154	anti-parallel
Strand 4	A	163	174	anti-parallel
Strand 5	A	179	189	anti-parallel
Strand 6	A	232	244	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	309	310	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	218	219	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	100	102	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	75	first strand
Strand 2	B	319	327	anti-parallel
Strand 3	B	333	338	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	252	259	anti-parallel
Strand 5	B	262	267	anti-parallel
Strand 6	B	279	284	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	298	300	parallel
Strand 3	B	206	208	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	292	295	anti-parallel
Strand 3	B	147	150	anti-parallel
Strand 4	B	167	174	anti-parallel
Strand 5	B	179	189	anti-parallel
Strand 6	B	232	244	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	309	310	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	161	164	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	218	219	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	100	102	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	75	first strand
Strand 2	C	319	327	anti-parallel
Strand 3	C	333	338	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	313	317	anti-parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	252	259	anti-parallel
Strand 5	C	262	267	anti-parallel
Strand 6	C	279	284	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	298	300	parallel
Strand 3	C	206	208	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	292	295	anti-parallel
Strand 3	C	147	150	anti-parallel
Strand 4	C	167	174	anti-parallel
Strand 5	C	179	189	anti-parallel
Strand 6	C	232	244	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	309	310	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	161	164	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	107	110	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	44	50	anti-parallel
Strand 3	L	99	104	anti-parallel
Strand 4	L	91	96	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	38	first strand
Strand 2	L	131	135	parallel
Strand 3	L	114	119	anti-parallel
Strand 4	L	62	67	anti-parallel
Strand 5	L	74	78	anti-parallel
Strand 6	L	82	83	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	38	first strand
Strand 2	L	131	135	parallel
Strand 3	L	114	119	anti-parallel
Strand 4	L	126	127	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	56	first strand
Strand 2	L	59	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	107	110	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	44	50	anti-parallel
Strand 3	E	99	104	anti-parallel
Strand 4	E	91	96	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	131	135	parallel
Strand 3	E	113	119	anti-parallel
Strand 4	E	62	67	anti-parallel
Strand 5	E	74	78	anti-parallel
Strand 6	E	82	83	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	131	135	parallel
Strand 3	E	113	119	anti-parallel
Strand 4	E	126	127	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	59	60	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	92	99	anti-parallel
Strand 5	F	107	110	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	92	99	anti-parallel
Strand 5	F	114	116	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	44	50	anti-parallel
Strand 3	G	99	104	anti-parallel
Strand 4	G	91	96	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	131	135	parallel
Strand 3	G	113	119	anti-parallel
Strand 4	G	62	67	anti-parallel
Strand 5	G	74	78	anti-parallel
Strand 6	G	82	83	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	131	135	parallel
Strand 3	G	113	119	anti-parallel
Strand 4	G	126	127	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	56	first strand
Strand 2	G	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J11

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J11