Analysis of interatomic Contacts of Structural Units in PDB entry:
6J13

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J13 entry

There are 8 chains in PDB entry 6J13 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 7	ASN 169
B	LYS 7	ASN 169
C	LYS 7	ASN 169
D	LYS 7	ASN 169
E	LYS 7	SER 168
F	LYS 7	ASN 169
G	LYS 7	ASN 169
H	LYS 7	LEU 130

There are 68 helices in PDB entry 6J13. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	36	Right-handed 310
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	63	69	Right-handed alpha
Helix 4	AA4	A	81	90	Right-handed alpha
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	111	117	Right-handed alpha
Helix 7	AA7	A	152	168	Right-handed alpha
Helix 8	AA8	B	33	36	Right-handed 310
Helix 9	AA9	B	54	63	Right-handed alpha
Helix 10	AB1	B	63	69	Right-handed alpha
Helix 11	AB2	B	81	90	Right-handed alpha
Helix 12	AB3	B	92	96	Right-handed 310
Helix 13	AB4	B	111	117	Right-handed alpha
Helix 14	AB5	B	152	169	Right-handed alpha
Helix 15	AB6	C	33	36	Right-handed 310
Helix 16	AB7	C	54	63	Right-handed alpha
Helix 17	AB8	C	63	69	Right-handed alpha
Helix 18	AB9	C	81	90	Right-handed alpha
Helix 19	AC1	C	111	117	Right-handed alpha
Helix 20	AC2	C	152	167	Right-handed alpha
Helix 21	AC3	D	54	63	Right-handed alpha
Helix 22	AC4	D	63	69	Right-handed alpha
Helix 23	AC5	D	81	90	Right-handed alpha
Helix 24	AC6	D	92	96	Right-handed 310
Helix 25	AC7	D	111	117	Right-handed alpha
Helix 26	AC8	D	152	167	Right-handed alpha
Helix 27	AC9	E	33	36	Right-handed 310
Helix 28	AD1	E	54	63	Right-handed alpha
Helix 29	AD2	E	63	69	Right-handed alpha
Helix 30	AD3	E	81	90	Right-handed alpha
Helix 31	AD4	E	92	96	Right-handed 310
Helix 32	AD5	E	111	117	Right-handed alpha
Helix 33	AD6	E	152	168	Right-handed alpha
Helix 34	AD7	F	33	36	Right-handed 310
Helix 35	AD8	F	54	63	Right-handed alpha
Helix 36	AD9	F	63	69	Right-handed alpha
Helix 37	AE1	F	81	90	Right-handed alpha
Helix 38	AE2	F	92	96	Right-handed 310
Helix 39	AE3	F	111	117	Right-handed alpha
Helix 40	AE4	F	152	168	Right-handed alpha
Helix 41	AE5	G	33	36	Right-handed 310
Helix 42	AE6	G	54	63	Right-handed alpha
Helix 43	AE7	G	63	69	Right-handed alpha
Helix 44	AE8	G	81	90	Right-handed alpha
Helix 45	AE9	G	92	96	Right-handed 310
Helix 46	AF1	G	111	117	Right-handed alpha
Helix 47	AF2	G	152	167	Right-handed alpha
Helix 48	AF3	H	33	36	Right-handed 310
Helix 49	AF4	H	54	63	Right-handed alpha
Helix 50	AF5	H	63	69	Right-handed alpha
Helix 51	AF6	H	81	90	Right-handed alpha
Helix 52	AF7	H	92	96	Right-handed 310
Helix 53	AF8	H	111	117	Right-handed alpha
Helix 54	AF9	H	152	169	Right-handed alpha
Helix 55	AG1	I	33	36	Right-handed 310
Helix 56	AG2	I	54	63	Right-handed alpha
Helix 57	AG3	I	63	69	Right-handed alpha
Helix 58	AG4	I	81	90	Right-handed alpha
Helix 59	AG5	I	92	96	Right-handed 310
Helix 60	AG6	I	111	117	Right-handed alpha
Helix 61	AG7	I	152	167	Right-handed alpha
Helix 62	AG8	J	33	36	Right-handed 310
Helix 63	AG9	J	54	63	Right-handed alpha
Helix 64	AH1	J	64	69	Right-handed alpha
Helix 65	AH2	J	81	90	Right-handed alpha
Helix 66	AH3	J	92	96	Right-handed 310
Helix 67	AH4	J	111	117	Right-handed alpha
Helix 68	AH5	J	152	169	Right-handed alpha

There are 7 sheets in PDB entry 6J13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	31	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	105	107	anti-parallel
Strand 4	A	72	78	parallel
Strand 5	A	39	44	parallel
Strand 6	A	128	133	anti-parallel
Strand 7	A	139	145	anti-parallel
Strand 8	B	139	145	anti-parallel
Strand 9	B	128	133	anti-parallel
Strand 10	B	39	44	anti-parallel
Strand 11	B	72	78	parallel
Strand 12	B	105	107	parallel
Strand 13	B	18	23	anti-parallel
Strand 14	B	26	31	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	31	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	105	107	anti-parallel
Strand 4	C	72	78	parallel
Strand 5	C	39	44	parallel
Strand 6	C	128	133	anti-parallel
Strand 7	C	139	145	anti-parallel
Strand 8	D	139	145	anti-parallel
Strand 9	D	128	133	anti-parallel
Strand 10	D	39	44	anti-parallel
Strand 11	D	72	78	parallel
Strand 12	D	105	107	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	26	31	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	31	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	105	107	anti-parallel
Strand 4	E	72	78	parallel
Strand 5	E	39	44	parallel
Strand 6	E	128	133	anti-parallel
Strand 7	E	139	145	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	31	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	105	107	anti-parallel
Strand 4	F	72	78	parallel
Strand 5	F	39	44	parallel
Strand 6	F	128	133	anti-parallel
Strand 7	F	139	145	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	31	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	105	107	anti-parallel
Strand 4	G	72	78	parallel
Strand 5	G	39	44	parallel
Strand 6	G	128	133	anti-parallel
Strand 7	G	139	145	anti-parallel
Strand 8	H	139	145	anti-parallel
Strand 9	H	128	133	anti-parallel
Strand 10	H	39	44	anti-parallel
Strand 11	H	72	78	parallel
Strand 12	H	105	107	parallel
Strand 13	H	18	23	anti-parallel
Strand 14	H	26	31	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	31	first strand
Strand 2	I	18	23	anti-parallel
Strand 3	I	105	107	anti-parallel
Strand 4	I	72	78	parallel
Strand 5	I	39	44	parallel
Strand 6	I	128	133	anti-parallel
Strand 7	I	139	145	anti-parallel
Strand 8	J	139	145	anti-parallel
Strand 9	J	128	133	anti-parallel
Strand 10	J	39	44	anti-parallel
Strand 11	J	72	78	parallel
Strand 12	J	105	107	parallel
Strand 13	J	18	23	anti-parallel
Strand 14	J	26	31	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J13

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J13