Analysis of interatomic Contacts of Structural Units in PDB entry:
6J17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J17 entry

There is 1 chain in PDB entry 6J17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1060LEU 1313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6J17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1112 1127Right-handed alpha
Helix 2
AA2
A
1161 1175Right-handed alpha
Helix 3
AA3
A
1203 1207Right-handed 310
Helix 4
AA4
A
1223 1228Right-handed alpha
Helix 5
AA5
A
1229 1236Right-handed 310
Helix 6
AA6
A
1248 1256Right-handed alpha
Helix 7
AA7
A
1256 1265Right-handed alpha
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There are 2 sheets in PDB entry 6J17. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1092 1096first strand
Strand 2
A
1080 1086anti-parallel
Strand 3
A
1305 1309anti-parallel
Strand 4
A
1294 1298anti-parallel
Strand 5
A
1268 1271anti-parallel
Strand 6
A
1102 1106parallel
Strand 7
A
1238 1244parallel
Strand 8
A
1196 1201parallel
Strand 9
A
1133 1138parallel
Strand 10
A
1154 1156parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1281 1282first strand
Strand 2
A
1285 1286anti-parallel
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