Analysis of interatomic Contacts of Structural Units in PDB entry:
6J18


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J18 entry

There is 1 chain in PDB entry 6J18 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1125HIS 1396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6J18. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1131 1140Right-handed alpha
Helix 2
AA2
A
1183 1199Right-handed alpha
Helix 3
AA3
A
1242 1259Right-handed alpha
Helix 4
AA4
A
1267 1273Right-handed alpha
Helix 5
AA5
A
1288 1292Right-handed 310
Helix 6
AA6
A
1298 1307Right-handed 310
Helix 7
AA7
A
1309 1313Right-handed 310
Helix 8
AA8
A
1326 1330Right-handed 310
Helix 9
AA9
A
1332 1341Right-handed alpha
Helix 10
AB1
A
1351 1354Right-handed 310
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There are 3 sheets in PDB entry 6J18. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1165first strand
Strand 2
A
1153 1157anti-parallel
Strand 3
A
1379 1384anti-parallel
Strand 4
A
1370 1374anti-parallel
Strand 5
A
1345 1347anti-parallel
Strand 6
A
1174 1178parallel
Strand 7
A
1315 1322parallel
Strand 8
A
1281 1286parallel
Strand 9
A
1215 1221parallel
Strand 10
A
1200 1201parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1165first strand
Strand 2
A
1153 1157anti-parallel
Strand 3
A
1379 1384anti-parallel
Strand 4
A
1370 1374anti-parallel
Strand 5
A
1345 1347anti-parallel
Strand 6
A
1174 1178parallel
Strand 7
A
1315 1322parallel
Strand 8
A
1281 1286parallel
Strand 9
A
1215 1221parallel
Strand 10
A
1236 1240parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1356 1358first strand
Strand 2
A
1361 1362anti-parallel
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