Analysis of interatomic Contacts of Structural Units in PDB entry:
6J19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J19 entry

There are 2 chains in PDB entry 6J19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 320PRO 580
B
 ASP 87PHE 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6J19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
329 334Right-handed alpha
Helix 2
AA2
A
343 348Right-handed alpha
Helix 3
AA3
A
381 397Right-handed alpha
Helix 4
AA4
A
418 422Right-handed 310
Helix 5
AA5
A
431 448Right-handed alpha
Helix 6
AA6
A
456 463Right-handed alpha
Helix 7
AA7
A
477 484Right-handed alpha
Helix 8
AA8
A
491 495Right-handed 310
Helix 9
AA9
A
497 499Right-handed 310
Helix 10
AB1
A
500 505Right-handed alpha
Helix 11
AB2
A
514 521Right-handed alpha
Helix 12
AB3
A
525 532Right-handed alpha
Helix 13
AB4
A
542 546Right-handed 310
Helix 14
AB5
B
94 98Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6J19.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 365first strand
Strand 2
A
349 355anti-parallel
Strand 3
A
568 573anti-parallel
Strand 4
A
560 565anti-parallel
Strand 5
A
536 538anti-parallel
Strand 6
A
372 376parallel
Strand 7
A
506 513parallel
Strand 8
A
470 475parallel
Strand 9
A
402 407parallel
Strand 10
A
428 429parallel
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