Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1B entry

There are 2 chains in PDB entry 6J1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8LEU 69
A
 PHE 73LYS 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6J1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed 310
Helix 2
AA2
A
61 66Right-handed alpha
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
85 90Right-handed alpha
Helix 5
AA5
A
137 142Right-handed alpha
Helix 6
AA6
A
231 238Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6J1B.

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
161 172anti-parallel
Strand 3
A
177 188anti-parallel
Strand 4
A
95 103anti-parallel
Strand 5
A
107 118anti-parallel
Strand 6
A
121 131anti-parallel
Strand 7
A
18 28parallel
Strand 8
A
31 41anti-parallel
Strand 9
A
46 53anti-parallel
Strand 10
A
218 228anti-parallel
Strand 11
A
200 209anti-parallel
Strand 12
A
150 157anti-parallel
Strand 13
A
161 172anti-parallel
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