Analysis of interatomic Contacts of Structural Units in PDB entry:
6J1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6J1F entry

There are 2 chains in PDB entry 6J1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 562
B
 HIS 0ARG 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6J1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
84 92Right-handed alpha
Helix 5
AA5
A
125 132Right-handed alpha
Helix 6
AA6
A
132 152Right-handed alpha
Helix 7
AA7
A
169 174Right-handed alpha
Helix 8
AA8
A
181 192Right-handed alpha
Helix 9
AA9
A
259 264Right-handed alpha
Helix 10
AB1
A
265 268Right-handed 310
Helix 11
AB2
A
304 308Right-handed 310
Helix 12
AB3
A
310 326Right-handed alpha
Helix 13
AB4
A
346 353Right-handed alpha
Helix 14
AB5
A
355 376Right-handed alpha
Helix 15
AB6
A
392 400Right-handed alpha
Helix 16
AB7
A
427 437Right-handed alpha
Helix 17
AB8
A
437 447Right-handed alpha
Helix 18
AB9
A
453 459Right-handed alpha
Helix 19
AC1
A
469 486Right-handed alpha
Helix 20
AC2
A
487 502Right-handed alpha
Helix 21
AC3
A
503 527Right-handed alpha
Helix 22
AC4
A
530 541Right-handed alpha
Helix 23
AC5
A
553 557Right-handed 310
Helix 24
AC6
B
11 23Right-handed alpha
Helix 25
AC7
B
35 47Right-handed alpha
Helix 26
AC8
B
63 68Right-handed alpha
Helix 27
AC9
B
84 92Right-handed alpha
Helix 28
AD1
B
125 132Right-handed alpha
Helix 29
AD2
B
132 150Right-handed alpha
Helix 30
AD3
B
169 174Right-handed alpha
Helix 31
AD4
B
181 192Right-handed alpha
Helix 32
AD5
B
259 263Right-handed alpha
Helix 33
AD6
B
263 268Right-handed alpha
Helix 34
AD7
B
304 308Right-handed 310
Helix 35
AD8
B
310 326Right-handed alpha
Helix 36
AD9
B
346 353Right-handed alpha
Helix 37
AE1
B
355 376Right-handed alpha
Helix 38
AE2
B
392 400Right-handed alpha
Helix 39
AE3
B
416 420Right-handed 310
Helix 40
AE4
B
427 447Right-handed alpha
Helix 41
AE5
B
453 459Right-handed alpha
Helix 42
AE6
B
469 486Right-handed alpha
Helix 43
AE7
B
487 502Right-handed alpha
Helix 44
AE8
B
503 527Right-handed alpha
Helix 45
AE9
B
530 541Right-handed alpha
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There are 12 sheets in PDB entry 6J1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
2 7parallel
Strand 3
A
50 55parallel
Strand 4
A
70 74parallel
Strand 5
A
96 103anti-parallel
Strand 6
A
113 120anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
163 164parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
205 215anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
232 236anti-parallel
Strand 5
A
225 229anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
205 215anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
257 258anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 294first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
331 336parallel
Strand 4
A
381 386parallel
Strand 5
A
403 406parallel
Strand 6
A
464 465parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
389 391parallel
Strand 3
A
411 413parallel
Strand 4
A
451 452anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
2 7parallel
Strand 3
B
50 55parallel
Strand 4
B
70 74parallel
Strand 5
B
96 103anti-parallel
Strand 6
B
112 120anti-parallel
Strand 7
B
157 158anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
163 164parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
205 215anti-parallel
Strand 3
B
241 249anti-parallel
Strand 4
B
232 236anti-parallel
Strand 5
B
225 229anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
205 215anti-parallel
Strand 3
B
241 249anti-parallel
Strand 4
B
257 258anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 294first strand
Strand 2
B
297 302anti-parallel
Strand 3
B
331 336parallel
Strand 4
B
381 386parallel
Strand 5
B
403 406parallel
Strand 6
B
464 465parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
389 391parallel
Strand 3
B
411 413parallel
Strand 4
B
451 452anti-parallel
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